Motif IL_74753.1 Version IL_74753.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_429D_002 | 429D | 0.1061 | 3 | C+D | RNA (13-mer) + RNA (11-mer) | C | 122 | C | 123 | C | 127 | * | G | 143 | G | 144 | A | 145 | G | 146 | cWW | ncWW | cWW |
| 2 | IL_1NUV_002 | 1NUV | 0.0000 | 3 | C+D | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 3 | IL_1NUV_003 | 1NUV | 0.0257 | 3 | E+F | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 4 | IL_2FQN_002 | 2FQN | 0.5072 | 2 | B+A | RNA (23-mer) | A | 38 | A | 39 | G | 42 | * | C | 7 | G | 8 | C | 9 | U | 10 | cWW | cWWa | cWW |
| 5 | IL_4A1B_070 | 4A1B | 0.6224 | 1 | 1 | 26S RRNA | U | 1843 | U | 1844 | C | 1846 | * | G | 1648 | G | 1649 | U | 1650 | A | 1651 | cWW | cwW | cWW |
| 6 | IL_4QIK_001 | 4QIK | 0.7618 | 0 | C+D | RNA (23-mer) | C | 10 | U | 11 | G | 12 | * | U | 11 | G | 12 | U | 13 | G | 14 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGAGC*GGAG | 3 |
| AAAAG*CGCU | 1 |
| UUUC*GGUA | 1 |
| CUG*UGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAG*GA | 3 |
| AAA*GC | 1 |
| UU*GU | 1 |
| U*GU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_74753.1 | Only in the parent motif |
|---|---|---|---|
| IL_77920.1 Compare | IL_1NUV_002, IL_1NUV_003, IL_429D_002 | IL_2FQN_002, IL_4QIK_001, IL_4A1B_070 | IL_3BNQ_002, IL_3J7A_010, IL_2QBG_108 |
| IL_51342.1 Compare | IL_2FQN_002, IL_4QIK_001, IL_4A1B_070 | IL_1NUV_002, IL_429D_002, IL_1NUV_003 | IL_1VX2_016, IL_1VW3_022, IL_1VX2_082, IL_4CUV_040, IL_4N0T_004 |
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWW-R-cWW
- Heat map statistics
- Min 0.03 | Avg 0.41 | Max 0.77
Coloring options: