Motif IL_77920.1 Version IL_77920.1 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8		9	1-9	2-8	3-6	3-7	4-5
1	IL_3BNQ_002	3BNQ	0.8986	0	A+B	A site of human mitochondrial ribosome, A chain	C	7	A	8	C	9	C	10	*	G	15	C	16	A	17	A	18	G	19	cWW	cwW	ncBW		cWW
2	IL_3J7A_010	3J7A	0.8434	0	A	SSU rRNA	A	302	U	303	C	304	G	305	*	C	119	U	120	A	121	C	122	U	123	cWW			ntSH	cWW
3	IL_2QBG_108	2QBG	0.7835	0	B	LSU rRNA	G	2843	G	2844	U	2845	G	2846	*	C	2870	U	2871	A	2872	A	2873	C	2874	cWW		cWw		cWW
4	IL_1NUV_003	1NUV	0.0211	1	F+E	RNA (11-mer)	G	43	G	44	A	45	G	46	*	C	22	C	23	A	25	G	26	C	27	cWW		ncWW		cWW
5	IL_1NUV_002	1NUV	0.0000	1	D+C	RNA (11-mer)	G	43	G	44	A	45	G	46	*	C	22	C	23	A	25	G	26	C	27	cWW		ncWW		cWW
6	IL_429D_002	429D	0.0875	1	D+C	RNA (11-mer)	G	143	G	144	A	145	G	146	*	C	122	C	123	A	125	G	126	C	127	cWW		ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAG*CCGAGC	3
CACC*GCAAG	1
AUCG*CUACU	1
GGUG*CUAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*CGAG	3
AC*CAA	1
UC*UAC	1
GU*UAA	1

Release history

Release	1.17
Date	2014-09-04
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_77920.1	Only in the parent motif
IL_19493.1 Compare	IL_1NUV_002, IL_429D_002, IL_2QBG_108	IL_3BNQ_002, IL_1NUV_003, IL_3J7A_010	IL_4A1B_070
IL_31555.6 Compare	IL_3BNQ_002	IL_1NUV_002, IL_429D_002, IL_3J7A_010, IL_1NUV_003, IL_2QBG_108	IL_3LOA_001, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010
IL_48183.2 Compare	IL_1NUV_003	IL_1NUV_002, IL_429D_002, IL_3J7A_010, IL_3BNQ_002, IL_2QBG_108	IL_4NVV_011, IL_4CUV_048, IL_4IOA_055, IL_1LNG_002, IL_4NVV_056

Children motifs

Child motif	Common motif instances	Only in IL_77920.1	Only in the child motif
IL_74753.1 Compare	IL_1NUV_002, IL_1NUV_003, IL_429D_002	IL_3BNQ_002, IL_3J7A_010, IL_2QBG_108	IL_2FQN_002, IL_4QIK_001, IL_4A1B_070
IL_77152.1 Compare	IL_3J7A_010	IL_1NUV_002, IL_1NUV_003, IL_429D_002, IL_3BNQ_002, IL_2QBG_108	IL_1Y0Q_002, IL_1U6B_004, IL_3CUN_001
IL_96532.1 Compare	IL_3BNQ_002	IL_3J7A_010, IL_1NUV_002, IL_1NUV_003, IL_429D_002, IL_2QBG_108	IL_2FQN_003, IL_4CUV_048, IL_4QCN_106, IL_1VX6_048, IL_4W23_043, IL_2OE5_002
IL_75951.1 Compare	IL_2QBG_108	IL_3J7A_010, IL_1NUV_002, IL_1NUV_003, IL_429D_002, IL_3BNQ_002	IL_3U5F_017, IL_4N0T_004

Annotations: (6)
Basepair signature: cWW-L-R-R-bif-cWW
Heat map statistics: Min 0.02 | Avg 0.55 | Max 0.91

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view

reading 588 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

2 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

588 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 144 ms

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Coloring options: Nucleotide numbers

Motif IL_77920.1 Version IL_77920.1 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_77920.1 Version IL_77920.1 of this group appears in releases 1.17 to 1.17

Download

Csv

Json