Motif IL_77920.1 Version IL_77920.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNQ_002 | 3BNQ | 0.8986 | 0 | A+B | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 17 | A | 18 | G | 19 | cWW | cwW | ncBW | cWW | |
| 2 | IL_3J7A_010 | 3J7A | 0.8434 | 0 | A | SSU rRNA | A | 302 | U | 303 | C | 304 | G | 305 | * | C | 119 | U | 120 | A | 121 | C | 122 | U | 123 | cWW | ntSH | cWW | ||
| 3 | IL_2QBG_108 | 2QBG | 0.7835 | 0 | B | 23S rRNA | G | 2843 | G | 2844 | U | 2845 | G | 2846 | * | C | 2870 | U | 2871 | A | 2872 | A | 2873 | C | 2874 | cWW | cWw | cWW | ||
| 4 | IL_1NUV_003 | 1NUV | 0.0211 | 1 | F+E | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | cWW | ncWW | cWW | ||
| 5 | IL_1NUV_002 | 1NUV | 0.0000 | 1 | D+C | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | cWW | ncWW | cWW | ||
| 6 | IL_429D_002 | 429D | 0.0875 | 1 | D+C | RNA (11-mer) | G | 143 | G | 144 | A | 145 | G | 146 | * | C | 122 | C | 123 | A | 125 | G | 126 | C | 127 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CCGAGC | 3 |
| CACC*GCAAG | 1 |
| AUCG*CUACU | 1 |
| GGUG*CUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*CGAG | 3 |
| AC*CAA | 1 |
| UC*UAC | 1 |
| GU*UAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_77920.1 | Only in the parent motif |
|---|---|---|---|
| IL_19493.1 Compare | IL_1NUV_002, IL_429D_002, IL_2QBG_108 | IL_3BNQ_002, IL_1NUV_003, IL_3J7A_010 | IL_4A1B_070 |
| IL_31555.6 Compare | IL_3BNQ_002 | IL_1NUV_002, IL_429D_002, IL_3J7A_010, IL_1NUV_003, IL_2QBG_108 | IL_3LOA_001, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010 |
| IL_48183.2 Compare | IL_1NUV_003 | IL_1NUV_002, IL_429D_002, IL_3J7A_010, IL_3BNQ_002, IL_2QBG_108 | IL_4NVV_011, IL_4CUV_048, IL_4IOA_055, IL_1LNG_002, IL_4NVV_056 |
Children motifs
| Child motif | Common motif instances | Only in IL_77920.1 | Only in the child motif |
|---|---|---|---|
| IL_74753.1 Compare | IL_1NUV_002, IL_1NUV_003, IL_429D_002 | IL_3BNQ_002, IL_3J7A_010, IL_2QBG_108 | IL_2FQN_002, IL_4QIK_001, IL_4A1B_070 |
| IL_77152.1 Compare | IL_3J7A_010 | IL_1NUV_002, IL_1NUV_003, IL_429D_002, IL_3BNQ_002, IL_2QBG_108 | IL_1Y0Q_002, IL_1U6B_004, IL_3CUN_001 |
| IL_96532.1 Compare | IL_3BNQ_002 | IL_3J7A_010, IL_1NUV_002, IL_1NUV_003, IL_429D_002, IL_2QBG_108 | IL_2FQN_003, IL_4CUV_048, IL_4QCN_106, IL_1VX6_048, IL_4W23_043, IL_2OE5_002 |
| IL_75951.1 Compare | IL_2QBG_108 | IL_3J7A_010, IL_1NUV_002, IL_1NUV_003, IL_429D_002, IL_3BNQ_002 | IL_3U5F_017, IL_4N0T_004 |
- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-R-bif-cWW
- Heat map statistics
- Min 0.02 | Avg 0.55 | Max 0.91
Coloring options: