Motif IL_75461.3 Version IL_75461.3 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-3 | 1-7 | 4-5 | 5-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_161 | 6CZR | 0.3336 | 3 | 180 degree turn | 1a | SSU rRNA | C | 1259 | U | 1260 | A | 1261 | C | 1264 | * | G | 1237 | A | 1238 | G | 1240 | cWW | cWW | ncSs | |
| 2 | IL_5J7L_055 | 5J7L | 0.2112 | 3 | 180 degree turn | AA | SSU rRNA | C | 1277 | G | 1278 | G | 1279 | C | 1282 | * | G | 1255 | A | 1256 | G | 1258 | cWW | cWW | cSs | |
| 3 | IL_4V88_460 | 4V88 | 0.0000 | 6 | 180 degree turn | A6 | SSU rRNA | G | 1513 | U | 1514 | A | 1515 | C | 1518 | * | G | 1488 | U | 1489 | C | 1494 | cSs | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAUC*GAUG | 1 |
| CGGACC*GAAG | 1 |
| GUAAUC*GUCUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAU*AU | 1 |
| GGAC*AA | 1 |
| UAAU*UCUAA | 1 |
- Annotations
-
- 180 degree turn (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.21 | Avg 0.17 | Max 0.33
Coloring options: