Motif IL_77076.2 Version IL_77076.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-6 | 4-5 | 4-16 | 5-16 | 10-15 | 11-14 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_106 | 4CUV | 0.1583 | 1 | 1 | 25S RRNA | G | 2466 | G | 2467 | A | 2468 | G | 2469 | * | C | 2476 | G | 2477 | C | 2478 | C | 2479 | G | 2480 | G | 2481 | U | 2482 | G | 2483 | A | 2485 | A | 2486 | U | 2487 | A | 2488 | C | 2489 | cWW | ntSH | tSs | ncWW | tWH | |||
| 2 | IL_1MZP_003 | 1MZP | 0.0000 | 1 | B | fragment of 23S rRNA | G | 20 | G | 21 | A | 22 | G | 23 | * | C | 32 | G | 33 | C | 34 | C | 35 | G | 36 | G | 37 | U | 38 | G | 39 | A | 41 | A | 42 | U | 43 | A | 44 | C | 45 | cWW | tSH | ntSs | cWW | ntsS | ntWH | tWH | |
| 3 | IL_3UMY_003 | 3UMY | 0.1503 | 1 | B | LSU rRNA | G | 2124 | G | 2125 | A | 2126 | G | 2127 | * | C | 2161 | G | 2162 | C | 2163 | C | 2164 | G | 2165 | G | 2166 | U | 2167 | G | 2168 | A | 2170 | A | 2171 | U | 2172 | A | 2173 | C | 2174 | cWW | tSH | tSs | cWW | tsS | ncsS | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CGCCGGUGAAAUAC | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GCCGGUGAAAUA | 3 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_77076.2 | Only in the parent motif |
|---|---|---|---|
| IL_77076.1 Compare | IL_3UMY_003, IL_1MZP_003 | IL_4CUV_106 |
Children motifs
| Child motif | Common motif instances | Only in IL_77076.2 | Only in the child motif |
|---|---|---|---|
| IL_77076.3 Compare | IL_4CUV_106, IL_3UMY_003, IL_1MZP_003 | IL_4QCN_082 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.12 | Max 0.23
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