Motif IL_78157.1 Version IL_78157.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2Y9B_005 | 2Y9B | 0.6825 | 0 | X | HOMO SAPIENS U4A SNRNA | G | 821 | G | 822 | C | 823 | * | G | 806 | A | 807 | C | 808 | cWW | cWW | cWW | |
| 2 | IL_2GDI_005 | 2GDI | 0.0000 | 1 | Y | TPP riboswitch | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW | |
| 3 | IL_3BNL_002 | 3BNL | 0.0459 | 1 | A+B | A site of bacterial ribosome | C | 6 | A | 7 | C | 8 | * | G | 15 | A | 17 | G | 18 | cWW | cWW | cWW | |
| 4 | IL_2GDI_001 | 2GDI | 0.6592 | 1 | X | TPP riboswitch | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW | |
| 5 | IL_2Y9B_008 | 2Y9B | 0.6816 | 0 | Y | HOMO SAPIENS U4A SNRNA | G | 821 | G | 822 | C | 823 | * | G | 806 | A | 807 | C | 808 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGC*GAC | 2 |
| GGU*AUAC | 2 |
| CAC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*A | 2 |
| G*UA | 2 |
| A*AA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_78157.1 | Only in the parent motif |
|---|---|---|---|
| IL_30092.1 Compare | IL_2GDI_005, IL_2GDI_001, IL_3BNL_002 | IL_2Y9B_005, IL_2Y9B_008 | IL_3O30_031 |
Children motifs
| Child motif | Common motif instances | Only in IL_78157.1 | Only in the child motif |
|---|---|---|---|
| IL_75447.1 Compare | IL_2GDI_005, IL_2GDI_001, IL_3BNL_002 | IL_2Y9B_005, IL_2Y9B_008 |
- Annotations
- Basepair signature
- 06_cWW-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.49 | Max 0.91
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