Motif IL_78732.2 Version IL_78732.2 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3D2V_006 | 3D2V | 0.0000 | 2 | cWH basepair and non-canonical AC (H) | B | TPP riboswitch (THI element) | U | 47 | G | 48 | A | 49 | C | 51 | * | G | 64 | C | 65 | G | 66 | A | 68 | cWW | cWH | cWW |
| 2 | IL_3BNP_002 | 3BNP | 0.0411 | 1 | A+B | A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain | C | 6 | A | 7 | C | 8 | C | 9 | * | G | 13 | C | 14 | A | 15 | G | 17 | cWW | cWW | ||
| 3 | IL_3BNP_003 | 3BNP | 0.1437 | 1 | B+A | A site of human mitochondrial ribosome, B chain | C | 5 | A | 6 | C | 7 | C | 8 | * | G | 14 | C | 15 | A | 16 | G | 18 | cWW | cWW | ||
| 4 | IL_2GDI_008 | 2GDI | 0.1640 | 2 | Y | TPP riboswitch | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW | |
| 5 | IL_2GDI_004 | 2GDI | 0.8961 | 2 | cWH basepair and non-canonical AC | X | TPP riboswitch | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW |
| 6 | IL_3D2V_003 | 3D2V | 0.9681 | 2 | cWH basepair and non-canonical AC | A | TPP riboswitch (THI element) | U | 47 | G | 48 | A | 49 | C | 51 | * | G | 64 | C | 65 | G | 66 | A | 68 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAC*GCGCA | 2 |
| CACC*GCAAG | 2 |
| UGAUC*GCGUA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*CGC | 2 |
| AC*CAA | 2 |
| GAU*CGU | 2 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_78732.2 | Only in the parent motif |
|---|---|---|---|
| IL_78732.1 Compare | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003 | IL_3BNP_003, IL_3BNP_002 | |
| IL_97736.1 Compare | IL_3BNP_003, IL_3BNP_002 | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003 | IL_3BNQ_011, IL_3BNQ_005, IL_2IL9_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_78732.2 | Only in the child motif |
|---|---|---|---|
| IL_78732.3 Compare | IL_2GDI_004, IL_3BNP_003, IL_3BNP_002, IL_2GDI_008, IL_3D2V_003 | IL_3D2V_006 |
- Annotations
-
- (3)
- cWH basepair and non-canonical AC (2)
- cWH basepair and non-canonical AC (H) (1)
- Basepair signature
- 08_cWW-cWH-tWS-cWW
- Heat map statistics
- Min 0.04 | Avg 0.45 | Max 0.97
Coloring options: