#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 111-112-105-86-7
1 IL_4IOA_1034IOA0.32410X LSU rRNAU2822G2823C2824A2825C2826G2827*U2840U2841C2842A2843G2844cWWtSHtHHcWW
2 IL_4A1B_1304A1B0.26700126S RRNAU3290G3291U3292A3293A3294G3295*C3323U3324G3325A3326G3327cWWntSHntHHcWW
3 IL_3U5H_1393U5H0.00000525S rRNAU3332G3333U3334A3335A3336G3337*C3367U3368G3369A3370G3371cWWntSHtHHcWW
4 IL_2QBG_1092QBG0.33290B23S rRNAU2847G2848U2849A2850A2851G2852*U2865U2866G2867A2868G2869cWWtSHtHHcWW
5 IL_3V2F_1063V2F0.61600A23S Ribosomal RNAU2847G2848U2849A2850A2851G2852*U2865U2866G2867A2868G2869cWWtSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGUAAG*CUGAG2
UGUAAG*UUGAG2
UGCACG*UUCAG1
Non-Watson-Crick part of the motif
SequenceCounts
GUAA*UGA4
GCAC*UCA1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.13
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_79083.3Only in the parent motif
IL_79083.2
Compare
IL_4A1B_130, IL_3V2F_106, IL_2QBG_109, IL_3U5H_139IL_4IOA_103IL_2ZJR_102

Children motifs

Child motifCommon motif instancesOnly in IL_79083.3Only in the child motif
IL_79083.4
Compare
IL_4A1B_130, IL_3U5H_139, IL_2QBG_109, IL_4IOA_103IL_3V2F_106IL_4NVV_106
Annotations
  • (5)
  • Basepair signature
    cWW-tSH-L-R-L-tHH-cWW
    Heat map statistics
    Min 0.16 | Avg 0.36 | Max 0.71
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