Motif IL_79083.3 Version IL_79083.3 of this group appears in releases 1.1 to 1.13

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11	1-11	2-10	5-8	6-7
1	IL_4IOA_103	4IOA	0.3241	X	LSU rRNA	U	2822	G	2823	C	2824	A	2825	C	2826	G	2827	*	U	2840	U	2841	C	2842	A	2843	G	2844	cWW	tSH	tHH	cWW
2	IL_4A1B_130	4A1B	0.2670	1	26S RRNA	U	3290	G	3291	U	3292	A	3293	A	3294	G	3295	*	C	3323	U	3324	G	3325	A	3326	G	3327	cWW	ntSH	ntHH	cWW
3	IL_3U5H_139	3U5H	0.0000	5	25S rRNA	U	3332	G	3333	U	3334	A	3335	A	3336	G	3337	*	C	3367	U	3368	G	3369	A	3370	G	3371	cWW	ntSH	tHH	cWW
4	IL_2QBG_109	2QBG	0.3329	B	23S rRNA	U	2847	G	2848	U	2849	A	2850	A	2851	G	2852	*	U	2865	U	2866	G	2867	A	2868	G	2869	cWW	tSH	tHH	cWW
5	IL_3V2F_106	3V2F	0.6160	A	23S Ribosomal RNA	U	2847	G	2848	U	2849	A	2850	A	2851	G	2852	*	U	2865	U	2866	G	2867	A	2868	G	2869	cWW	tSH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGUAAG*CUGAG	2
UGUAAG*UUGAG	2
UGCACG*UUCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAA*UGA	4
GCAC*UCA	1

Release history

Release	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13
Date	2013-04-08	2013-05-04	2013-06-01	2013-07-01	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_79083.3	Only in the parent motif
IL_79083.2 Compare	IL_4A1B_130, IL_3V2F_106, IL_2QBG_109, IL_3U5H_139	IL_4IOA_103	IL_2ZJR_102

Children motifs

Child motif	Common motif instances	Only in IL_79083.3	Only in the child motif
IL_79083.4 Compare	IL_4A1B_130, IL_3U5H_139, IL_2QBG_109, IL_4IOA_103	IL_3V2F_106	IL_4NVV_106

Annotations: (5)
Basepair signature: cWW-tSH-L-R-L-tHH-cWW
Heat map statistics: Min 0.16 | Avg 0.36 | Max 0.71

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Coloring options: Nucleotide numbers

Motif IL_79083.3 Version IL_79083.3 of this group appears in releases 1.1 to 1.13 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_79083.3 Version IL_79083.3 of this group appears in releases 1.1 to 1.13

Download

Csv

Json