Motif IL_80407.1 Version IL_80407.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_012 | 2ZJR | 0.4199 | 0 | AAA cross-strand stack (H) | X | LSU rRNA | U | 616 | U | 617 | A | 618 | A | 619 | G | 620 | * | C | 629 | G | 630 | G | 631 | A | 632 | G | 633 | cWW | tHS | cWW | ||
| 2 | IL_3PYO_015 | 3PYO | 0.0000 | 0 | A | 23S ribosomal RNA | U | 606 | U | 607 | A | 608 | A | 609|||A | G | 609|||B | * | C | 618|||B | G | 619 | G | 620 | A | 621 | G | 622 | cWW | ntWH | tHS | cWW | ||
| 3 | IL_2ZJR_071 | 2ZJR | 0.1970 | 0 | Triple sheared (H) | X | LSU rRNA | C | 1865 | G | 1866 | A | 1867 | A | 1868 | A | 1869 | * | U | 1848 | G | 1849 | G | 1850 | A | 1851 | G | 1852 | cWW | ntSH | ntHS | ntHS | cWW |
| 4 | IL_3O30_034 | 3O30 | 0.2278 | 0 | 1 | 18S ribosomal RNA | U | 968 | C | 969 | A | 970 | A | 971 | G | 972 | * | C | 627 | G | 628 | U | 629 | A | 630 | G | 631 | cWW | tHS | cWW | |||
| 5 | IL_3MUR_002 | 3MUR | 0.4888 | 0 | R | C92U mutant c-di-GMP riboswitch | C | 22 | A | 23 | A | 24 | A | 25 | C | 26 | * | G | 41 | G | 42 | A | 43 | C | 44 | G | 45 | cWW | ntSH | tHS | cWW | ||
| 6 | IL_2QBG_019 | 2QBG | 0.6385 | 0 | B | 23S rRNA | U | 606 | U | 607 | A | 608 | A | 609 | C | 610 | * | G | 618 | G | 619 | G | 620 | A | 621 | G | 622 | cWW | ntWH | tHS | cWW | ||
| 7 | IL_1S72_021 | 1S72 | 0.7747 | 0 | AAA cross-strand stack (H) | 0 | LSU rRNA | C | 663 | U | 664 | A | 665 | A | 666 | C | 667 | * | G | 679 | G | 680 | G | 681 | A | 682 | G | 683 | cWW | ntWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAG*CGGAG | 2 |
| CGAAA*UGGAG | 1 |
| CGUAG*UCAAG | 1 |
| CAAAC*GGACG | 1 |
| UUAAC*GGGAG | 1 |
| CUAAC*GGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GGA | 4 |
| GAA*GGA | 1 |
| GUA*CAA | 1 |
| AAA*GAC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_80407.1 | Only in the parent motif |
|---|---|---|---|
| IL_47124.1 Compare | IL_2ZJR_071, IL_2ZJR_012, IL_1S72_021 | IL_2QBG_019, IL_3PYO_015, IL_3O30_034, IL_3MUR_002 | IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_1FJG_033, IL_1FJG_023, IL_1S72_023, IL_2ZJR_088, IL_3F1H_051, IL_2QWY_007, IL_3G78_002, IL_3F1H_015, IL_2QWY_001 |
| IL_72638.1 Compare | IL_3MUR_002 | IL_3O30_034, IL_2ZJR_012, IL_1S72_021, IL_2QBG_019, IL_3PYO_015, IL_2ZJR_071 | IL_3F1H_026, IL_1S72_028, IL_3F1H_020, IL_3F1H_072 |
Children motifs
| Child motif | Common motif instances | Only in IL_80407.1 | Only in the child motif |
|---|---|---|---|
| IL_87904.1 Compare | IL_2QBG_019, IL_2ZJR_012, IL_1S72_021, IL_2ZJR_071 | IL_3PYO_015, IL_3O30_034, IL_3MUR_002 | IL_2AW7_058, IL_3UXR_021, IL_1S72_083, IL_3G78_002, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2XZM_092, IL_3IWN_002, IL_2ZJR_088, IL_2A64_006, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_3DHS_004, IL_2A64_005 |
- Annotations
-
- (4)
- AAA cross-strand stack (H) (2)
- Triple sheared (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.15 | Avg 0.48 | Max 0.85
Coloring options: