Motif IL_81389.2 Version IL_81389.2 of this group appears in releases 3.18 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3FS0_001 | 3FS0 | 0.4125 | 0 | UAA/GAN related | B+A | RNA (11-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | tSH | ntHh | cWW | |
| 2 | IL_3IGI_009 | 3IGI | 0.3197 | 0 | UAA/GAN related | A | Group IIC intron | C | 190 | A | 191 | A | 192 | A | 193 | G | 194 | * | U | 172 | G | 173 | A | 174 | G | 175 | cWW | tSH | tHS | cWW | |
| 3 | IL_2R8S_002 | 2R8S | 0.3034 | 0 | UAA/GAN variation | R | P4-P6 RNA RIBOZYME DOMAIN | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | * | U | 205 | A | 206 | A | 207 | C | 208 | cWW | tSH | tHS | cWW | |
| 4 | IL_5J7L_317 | 5J7L | 0.2406 | 0 | UAA/GAN variation | DA | LSU rRNA | C | 1874 | G | 1875 | A | 1876 | A | 1877 | G | 1878 | * | U | 1864 | U | 1865 | A | 1866 | G | 1867 | cWW | tSH | cWW | ||
| 5 | IL_3FTM_002 | 3FTM | 0.2966 | 0 | UAA/GAN variation | D+C | RNA (12-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | ntSH | cWW | ||
| 6 | IL_4LFB_062 | 4LFB | 0.0000 | 0 | UAA/GAN variation | A | SSU rRNA | C | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | G | 1467 | A | 1468 | G | 1469 | cWW | tSH | tHS | cWW | |
| 7 | IL_6CZR_170 | 6CZR | 0.1537 | 0 | UAA/GAN variation | 1a | SSU rRNA | C | 1414 | G | 1415 | A | 1416 | A | 1417 | G | 1418 | * | C | 1444 | G | 1445 | A | 1446 | G | 1447 | cWW | ntSH | ntHS | cWW | |
| 8 | IL_5J7L_303 | 5J7L | 0.2049 | 0 | UAA/GAN variation | DA | LSU rRNA | U | 1542 | G | 1543 | A | 1544 | A | 1545 | G | 1546 | * | C | 1526 | G | 1527 | A | 1528 | G | 1529 | cWW | ntSH | tHS | cWW | |
| 9 | IL_2R8S_006 | 2R8S | 0.4134 | 1 | UAA/GAN variation | R | P4-P6 RNA RIBOZYME DOMAIN | C | 216 | C | 217 | A | 218 | A | 219 | G | 220 | * | U | 253 | G | 254 | A | 256 | G | 257 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAA*UGAG | 2 |
| CGAAG*CGAG | 2 |
| CAAAG*UGAG | 1 |
| GAAAG*UAAC | 1 |
| CGAAG*UUAG | 1 |
| UGAAG*CGAG | 1 |
| CCAAG*UGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*GA | 3 |
| GGA*GA | 2 |
| AAA*GA | 1 |
| AAA*AA | 1 |
| GAA*UA | 1 |
| CAA*GCA | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UAA/GAN variation (7)
- UAA/GAN related (2)
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.15 | Avg 0.34 | Max 0.62
Coloring options: