Motif IL_81589.1 Version IL_81589.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-13 | 2-6 | 3-9 | 4-13 | 6-7 | 6-8 | 6-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_072 | 7A0S | 0.0000 | 3 | X | LSU rRNA | C | 1917 | G | 1918 | A | 1919 | A | 1920 | U | 1922 | U | 1923 | C | 1924 | C | 1925 | U | 1926 | G | 1928 | * | C | 1944 | C | 1945 | G | 1947 | cWW | ncSH | ntWS | ncSH | cWW | |||
| 2 | IL_4V9F_071 | 4V9F | 0.2776 | 3 | 0 | LSU rRNA | C | 1975 | G | 1976 | U | 1977 | A | 1978 | U | 1980 | A | 1981 | C | 1982 | C | 1983 | U | 1984 | G | 1986 | * | C | 2002 | U | 2003 | G | 2005 | cWW | cwW | ncSH | ntSW | cWW | |||
| 3 | IL_4WF9_077 | 4WF9 | 0.3651 | 3 | X | LSU rRNA | C | 1961 | G | 1962 | A | 1963 | A | 1964 | U | 1966 | U | 1967 | C | 1968 | C | 1969 | U | 1970 | G | 1972 | * | C | 1988 | C | 1989 | G | 1991 | cWW | ncSH | ncHW | ntSW | cWW | |||
| 4 | IL_5TBW_090 | 5TBW | 0.5649 | 3 | 1 | LSU rRNA | C | 2277 | C | 2278 | A | 2279 | A | 2280 | U | 2282 | G | 2283 | C | 2284 | C | 2285 | U | 2286 | G | 2288 | * | C | 2304 | G | 2305 | G | 2307 | cWW | cHW | ntSW | tHh | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAAUUCCUUG*CCUG | 1 |
| CGUAGUACCUUG*CUUG | 1 |
| CGAAAUUCCUUG*CCCG | 1 |
| CCAAAUGCCUCG*CGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAUUCCUU*CU | 1 |
| GUAGUACCUU*UU | 1 |
| GAAAUUCCUU*CC | 1 |
| CAAAUGCCUC*GC | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-L-L-R-tSW-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.29 | Max 0.75
Coloring options: