Motif IL_82188.1 Version IL_82188.1 of this group appears in releases 0.6 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-4 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBZ_005 | 2QBZ | 0.3841 | 0 | X | M-Box RNA, ykoK riboswitch aptamer | A | 60 | A | 61 | A | 62 | A | 63 | A | 64 | U | 65 | G | 66 | * | C | 75 | G | 76 | C | 77 | C | 78 | A | 79 | A | 80 | U | 81 | cWW | tSH | ntHS | ncWWa | cWW | ||
| 2 | IL_4A1B_090 | 4A1B | 0.0000 | 0 | 1 | 26S RRNA | U | 2206 | C | 2207 | A | 2208 | A | 2209 | A | 2210 | G | 2211 | U | 2212 | * | A | 2223 | A | 2224 | C | 2225 | C | 2226 | A | 2227 | A | 2228 | G | 2229 | cWW | ntSH | ncWW | cWW | |||
| 3 | IL_1S72_069 | 1S72 | 0.3678 | 0 | 0 | LSU rRNA | U | 1907 | G | 1908 | A | 1909 | A | 1910 | C | 1911 | A | 1912 | C | 1913 | * | G | 1926 | A | 1927 | C | 1928 | G | 1929 | A | 1930 | A | 1931 | G | 1932 | cWW | tSH | ncWw | cWW | |||
| 4 | IL_2XZM_011 | 2XZM | 0.6264 | 1 | A | 18S RRNA | G | 159 | C | 160 | U | 161 | A | 162 | A | 163 | A | 165 | C | 166 | * | G | 137 | G | 138 | A | 139 | U | 140 | A | 141 | A | 142 | C | 143 | cWW | ntWH | ncWH | ntWW | cWW | cWW | |
| 5 | IL_2OIU_002 | 2OIU | 0.7083 | 0 | P | L1 Ribozyme RNA Ligase | C | 21 | G | 22 | A | 23 | C | 24 | C | 25 | A | 26 | G | 27 | * | C | 34 | U | 35 | C | 36 | U | 37 | U | 38 | A | 39 | G | 40 | cWW | tSH | ncwW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAAUG*CGCCAAU | 1 |
| UCAAAGU*AACCAAG | 1 |
| UGAACAC*GACGAAG | 1 |
| GGAUAAC*GCUAAUAC | 1 |
| CGACCAG*CUCUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAAU*GCCAA | 1 |
| CAAAG*ACCAA | 1 |
| GAACA*ACGAA | 1 |
| GAUAA*CUAAUA | 1 |
| GACCA*UCUUA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_82188.1 | Only in the parent motif |
|---|---|---|---|
| IL_20328.1 Compare | IL_1S72_069, IL_2OIU_002 | IL_2XZM_011, IL_2QBZ_005, IL_4A1B_090 | IL_3O58_106, IL_3O58_052 |
| IL_63662.1 Compare | IL_2XZM_011 | IL_1S72_069, IL_2OIU_002, IL_2QBZ_005, IL_4A1B_090 | |
| IL_92348.1 Compare | IL_2QBZ_005 | IL_1S72_069, IL_2OIU_002, IL_2XZM_011, IL_4A1B_090 |
Children motifs
| Child motif | Common motif instances | Only in IL_82188.1 | Only in the child motif |
|---|---|---|---|
| IL_82188.2 Compare | IL_1S72_069, IL_2OIU_002, IL_2QBZ_005, IL_4A1B_090 | IL_2XZM_011 |
- Annotations
- Basepair signature
- cWW-tSH-L-R-R-R-R-L-L-L-cWW
- Heat map statistics
- Min 0.37 | Avg 0.52 | Max 0.82
Coloring options: