#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 13 141-142-135-106-97-8
1 IL_2QBZ_0052QBZ0.38410XM-Box RNA, ykoK riboswitch aptamerA60A61A62A63A64U65G66*C75G76C77C78A79A80U81cWWtSHntHSncWWacWW
2 IL_4A1B_0904A1B0.00000126S RRNAU2206C2207A2208A2209A2210G2211U2212*A2223A2224C2225C2226A2227A2228G2229cWWntSHncWWcWW
3 IL_1S72_0691S720.367800 LSU rRNAU1907G1908A1909A1910C1911A1912C1913*G1926A1927C1928G1929A1930A1931G1932cWWtSHncWwcWW
4 IL_2OIU_0022OIU0.70830PL1 Ribozyme RNA LigaseC21G22A23C24C25A26G27*C34U35C36U37U38A39G40cWWtSHncwWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AAAAAUG*CGCCAAU1
UCAAAGU*AACCAAG1
UGAACAC*GACGAAG1
CGACCAG*CUCUUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AAAAU*GCCAA1
CAAAG*ACCAA1
GAACA*ACGAA1
GACCA*UCUUA1

Release history

Release1.51.61.71.81.91.101.111.121.131.14
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_82188.2Only in the parent motif
IL_82188.1
Compare
IL_1S72_069, IL_2OIU_002, IL_2QBZ_005, IL_4A1B_090IL_2XZM_011

Children motifs

Child motifCommon motif instancesOnly in IL_82188.2Only in the child motif
IL_82188.3
Compare
IL_1S72_069, IL_2OIU_002, IL_2QBZ_005, IL_4A1B_090IL_4CUX_011, IL_4CUV_096
Annotations
  • (4)
  • Basepair signature
    cWW-tSH-L-R-R-R-R-L-L-L-cWW
    Heat map statistics
    Min 0.37 | Avg 0.44 | Max 0.82
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