Motif IL_82188.4 Version IL_82188.4 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 4-11 | 5-10 | 6-7 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OIU_002 | 2OIU | 0.7083 | 0 | P | L1 Ribozyme RNA Ligase | C | 21 | G | 22 | A | 23 | C | 24 | C | 25 | A | 26 | G | 27 | * | C | 34 | U | 35 | C | 36 | U | 37 | U | 38 | A | 39 | G | 40 | cWW | tSH | ncwW | cWW | cWW | ||
| 2 | IL_1VWW_103 | 1VWW | 0.6670 | -3 | 5 | 28S ribosomal RNA | C | 2685 | G | 2686 | G | 2688 | C | 2689 | C | 2690 | U | 2691 | U | 2692 | * | A | 2642 | G | 2643 | G | 2644 | G | 2645 | C | 2646 | A | 2647 | G | 2648 | cWW | ncSH | cWW | ||||
| 3 | IL_4CUX_011 | 4CUX | 0.6025 | 1 | 2 | 18S RRNA | G | 165 | C | 166 | U | 167 | A | 168 | A | 169 | A | 171 | C | 172 | * | G | 143 | U | 144 | A | 145 | U | 146 | A | 147 | A | 148 | C | 149 | cWW | ntHW | tHW | cWW | |||
| 4 | IL_1S72_069 | 1S72 | 0.3678 | 0 | 0 | LSU rRNA | U | 1907 | G | 1908 | A | 1909 | A | 1910 | C | 1911 | A | 1912 | C | 1913 | * | G | 1926 | A | 1927 | C | 1928 | G | 1929 | A | 1930 | A | 1931 | G | 1932 | cWW | tSH | ncWw | cWW | |||
| 5 | IL_4CUV_096 | 4CUV | 0.1278 | 0 | 1 | 25S RRNA | U | 2211 | C | 2212 | A | 2213 | A | 2214 | A | 2215 | G | 2216 | U | 2217 | * | A | 2228 | A | 2229 | C | 2230 | C | 2231 | A | 2232 | A | 2233 | G | 2234 | cWW | cWW | cWW | ||||
| 6 | IL_4A1B_090 | 4A1B | 0.0000 | 0 | 1 | 26S RRNA | U | 2206 | C | 2207 | A | 2208 | A | 2209 | A | 2210 | G | 2211 | U | 2212 | * | A | 2223 | A | 2224 | C | 2225 | C | 2226 | A | 2227 | A | 2228 | G | 2229 | cWW | ntSH | ncWW | cWW | |||
| 7 | IL_2QBZ_005 | 2QBZ | 0.3841 | 0 | X | M-Box RNA, ykoK riboswitch aptamer | A | 60 | A | 61 | A | 62 | A | 63 | A | 64 | U | 65 | G | 66 | * | C | 75 | G | 76 | C | 77 | C | 78 | A | 79 | A | 80 | U | 81 | cWW | tSH | ntHS | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAAAGU*AACCAAG | 2 |
| CGACCAG*CUCUUAG | 1 |
| GAAACG*CUCGC | 1 |
| GCUAAUAC*GUAUAAC | 1 |
| UGAACAC*GACGAAG | 1 |
| AAAAAUG*CGCCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAG*ACCAA | 2 |
| GACCA*UCUUA | 1 |
| AAAC*UCG | 1 |
| CUAAUA*UAUAA | 1 |
| GAACA*ACGAA | 1 |
| AAAAU*GCCAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_82188.4 | Only in the parent motif |
|---|---|---|---|
| IL_82188.3 Compare | IL_2OIU_002, IL_2QBZ_005, IL_4CUV_096, IL_4CUX_011, IL_1S72_069, IL_4A1B_090 | IL_1VWW_103 |
Children motifs
| Child motif | Common motif instances | Only in IL_82188.4 | Only in the child motif |
|---|---|---|---|
| IL_82188.5 Compare | IL_1S72_069, IL_2OIU_002, IL_4A1B_090, IL_2QBZ_005, IL_4CUV_096 | IL_1VWW_103, IL_4CUX_011 | IL_4W21_101, IL_4W23_001 |
| IL_86694.2 Compare | IL_4CUX_011 | IL_2OIU_002, IL_2QBZ_005, IL_4CUV_096, IL_1S72_069, IL_1VWW_103, IL_4A1B_090 | IL_2AW7_012, IL_3U5F_011, IL_4BPP_011, IL_3J7A_011 |
- Annotations
-
- (7)
- Basepair signature
- cWW-tSH-L-R-R-R-R-L-L-L-cWW
- Heat map statistics
- Min 0.13 | Avg 0.53 | Max 0.82
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