Motif IL_82367.1 Version IL_82367.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 3-4 | 6-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_103 | 2ZJR | 0.0000 | 0 | Y | C | 19 | A | 20 | C | 21 | * | G | 66 | C | 67 | A | 68 | G | 69 | cWW | cWW | cWW | |
| 2 | IL_2ZJR_038 | 2ZJR | 0.5281 | 1 | X | G | 1070 | U | 1071 | G | 1073 | * | C | 1087 | A | 1088 | C | 1089 | C | 1090 | cWW | cWW | ||
| 3 | IL_1QA6_001 | 1QA6 | 1.3293 | 1 | C | G | 109 | U | 110 | G | 112 | * | C | 126 | A | 127 | U | 128 | C | 129 | cWW | cWW | ||
| 4 | IL_1QA6_003 | 1QA6 | 1.3381 | 1 | D | G | 109 | U | 110 | G | 112 | * | C | 126 | A | 127 | U | 128 | C | 129 | cWW | cWW | ||
| 5 | IL_1MMS_001 | 1MMS | 1.3459 | 1 | C | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | U | 1078 | C | 1079 | cWW | cWW | ||
| 6 | IL_1MMS_003 | 1MMS | 1.3588 | 1 | D | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | U | 1078 | C | 1079 | cWW | cWW | ||
| 7 | IL_1S72_072 | 1S72 | 1.3588 | 0 | 0 | U | 2652 | A | 2653 | C | 2654 | * | G | 2090 | G | 2091 | G | 2092 | G | 2093 | cWW | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAG*CAUC | 2 |
| GUUG*CAUC | 2 |
| CAC*GCAG | 1 |
| GUUG*CACC | 1 |
| UAC*GGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*AU | 2 |
| UU*AU | 2 |
| A*CA | 1 |
| UU*AC | 1 |
| A*GG | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_82367.1 | Only in the parent motif |
|---|---|---|---|
| IL_20312.1 Compare | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001 | IL_2ZJR_103, IL_1S72_072 | IL_2OEU_002 |
| IL_35355.1 Compare | IL_1S72_072 | IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001, IL_2ZJR_103, IL_1MMS_003, IL_1MMS_001 | |
| IL_13128.1 Compare | IL_2ZJR_103 | IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001, IL_1MMS_003, IL_1MMS_001, IL_1S72_072 | IL_2GDI_005, IL_2GDI_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_82367.1 | Only in the child motif |
|---|---|---|---|
| IL_82367.2 Compare | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001 | IL_2ZJR_103, IL_1S72_072 | IL_2GIS_003 |
| IL_59557.1 Compare | IL_2ZJR_103, IL_1S72_072 | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001 |
Coloring options: