#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 71-72-63-44-5
1 IL_2GIS_0032GIS0.00000ASAM-I riboswitchC44A45A46C47*G56U57G58cWWtSHncSHcWW
2 IL_1QA6_0011QA60.93831C58 NUCLEOTIDE RIBOSOMAL RNA DOMAINC126A127U128C129*G109U110G112cWWcWW
3 IL_1QA6_0031QA60.94831D58 NUCLEOTIDE RIBOSOMAL RNA DOMAINC126A127U128C129*G109U110G112cWWcWW
4 IL_1MMS_0031MMS0.95781D23S RIBOSOMAL RNAC1076A1077U1078C1079*G1059U1060G1062cWWcWW
5 IL_1MMS_0011MMS0.96781C23S RIBOSOMAL RNAC1076A1077U1078C1079*G1059U1060G1062cWWcWW
6 IL_2ZJR_0382ZJR0.96781X LSU rRNAC1087A1088C1089C1090*G1070U1071G1073cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAUC*GUAG2
CAUC*GUUG2
CAAC*GUG1
CACC*GUUG1
Non-Watson-Crick part of the motif
SequenceCounts
AU*UA2
AU*UU2
AA*U1
AC*UU1

Release history

Release0.3
Date2011-12-08
StatusUpdated, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_82367.2Only in the child motif
IL_82367.3
Compare
IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001IL_2GIS_003IL_2OEU_002
IL_13561.1
Compare
IL_2GIS_003IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001IL_2PXV_001
Annotations
  • (6)
  • Basepair signature
    Heat map statistics
    Min 0.00 | Avg 0.33 | Max 0.97
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