Motif IL_82367.2 Version IL_82367.2 of this group appears in releases 0.3 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2GIS_003 | 2GIS | 0.0000 | 0 | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | ncSH | cWW |
2 | IL_1QA6_001 | 1QA6 | 0.9383 | 1 | C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | C | 126 | A | 127 | U | 128 | C | 129 | * | G | 109 | U | 110 | G | 112 | cWW | cWW | ||
3 | IL_1QA6_003 | 1QA6 | 0.9483 | 1 | D | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | C | 126 | A | 127 | U | 128 | C | 129 | * | G | 109 | U | 110 | G | 112 | cWW | cWW | ||
4 | IL_1MMS_003 | 1MMS | 0.9578 | 1 | D | 23S RIBOSOMAL RNA | C | 1076 | A | 1077 | U | 1078 | C | 1079 | * | G | 1059 | U | 1060 | G | 1062 | cWW | cWW | ||
5 | IL_1MMS_001 | 1MMS | 0.9678 | 1 | C | 23S RIBOSOMAL RNA | C | 1076 | A | 1077 | U | 1078 | C | 1079 | * | G | 1059 | U | 1060 | G | 1062 | cWW | cWW | ||
6 | IL_2ZJR_038 | 2ZJR | 0.9678 | 1 | X | LSU rRNA | C | 1087 | A | 1088 | C | 1089 | C | 1090 | * | G | 1070 | U | 1071 | G | 1073 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAUC*GUAG | 2 |
CAUC*GUUG | 2 |
CAAC*GUG | 1 |
CACC*GUUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AU*UA | 2 |
AU*UU | 2 |
AA*U | 1 |
AC*UU | 1 |
Release history
Release | 0.3 |
---|---|
Date | 2011-12-08 |
Status | Updated, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_82367.2 | Only in the parent motif |
---|---|---|---|
IL_82367.1 Compare | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001 | IL_2GIS_003 | IL_2ZJR_103, IL_1S72_072 |
IL_57863.1 Compare | IL_2GIS_003 | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001 |
Children motifs
Child motif | Common motif instances | Only in IL_82367.2 | Only in the child motif |
---|---|---|---|
IL_82367.3 Compare | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001 | IL_2GIS_003 | IL_2OEU_002 |
IL_13561.1 Compare | IL_2GIS_003 | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001 | IL_2PXV_001 |
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