#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-53-4
1 IL_5TBW_0775TBW0.16955Intercalated tWH1 LSU rRNAC2333U2334U2336*A1901G1906cWWcWW
2 IL_4V9F_0624V9F0.13575Intercalated tWH0 LSU rRNAC2031U2032U2034*A1747G1752cWWcWW
3 IL_4WF9_0654WF90.11985Intercalated tWHX LSU rRNAC2017U2018U2020*A1713G1718cWWcWW
4 IL_5J7L_3075J7L0.09225Intercalated tWHDA LSU rRNAC1990U1991U1993*A1669G1674cWWcWW
5 IL_7A0S_0627A0S0.09515Intercalated tWHX LSU rRNAC1973U1974U1976*A1686G1691cWWcWW
6 IL_7RQB_0677RQB0.00005Intercalated tWH1A LSU rRNAC1990U1991U1993*A1669G1674cWWcWW
7 IL_7A0S_0447A0S0.55501Intercalated cWWX LSU rRNAG1241A1242G1243*U1232C1234cWWcWW
8 IL_4WF9_0474WF90.79051Intercalated cWWX LSU rRNAG1266A1267C1268*G1257U1259cWWcWW
9 IL_5VCI_0055VCI0.66050Not an internal loopA+BRNA (22-mer) + RNA (12-mer)G13C14C15*G22C1cWWcWW
10 IL_2O3X_0012O3X0.72191Stack and bulgeB+ARNA (23-mer)G42U43C44*G5C7cWWcWW
11 IL_2ET8_0012ET80.71881Stack and bulgeB+ARNA (22-mer)G41U42C43*G4C6cWWcWW
12 IL_2O3X_0032O3X0.63742Decoding loop relatedB+ARNA (23-mer)C30A31C32*G16G19cWWcWW
13 IL_7A0S_0927A0S0.89012Other ILX LSU rRNAC2570G2571U2572*A2579G2582cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC2
CUGU*AGUCGG1
CUGU*AUUCGG1
CUGU*ACUCGG1
CUGU*ACUAGG1
CUGU*ACUUUG1
CUGU*ACUCUG1
GAG*UAC1
GAC*GAU1
GCC*GC1
CAC*GAAG1
CGU*ACAG1
Non-Watson-Crick part of the motif
SequenceCounts
A*A2
U*U2
UG*GUCG1
UG*UUCG1
UG*CUCG1
UG*CUAG1
UG*CUUU1
UG*CUCU1
C*1
A*AA1
G*CA1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Intercalated tWH (6)
  • Stack and bulge (2)
  • Intercalated cWW (2)
  • Decoding loop related (1)
  • Not an internal loop (1)
  • Other IL (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.07 | Avg 0.47 | Max 0.94
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