Motif IL_82842.1 Version IL_82842.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_077 | 5TBW | 0.1695 | 5 | Intercalated tWH | 1 | LSU rRNA | C | 2333 | U | 2334 | U | 2336 | * | A | 1901 | G | 1906 | cWW | cWW |
| 2 | IL_4V9F_062 | 4V9F | 0.1357 | 5 | Intercalated tWH | 0 | LSU rRNA | C | 2031 | U | 2032 | U | 2034 | * | A | 1747 | G | 1752 | cWW | cWW |
| 3 | IL_4WF9_065 | 4WF9 | 0.1198 | 5 | Intercalated tWH | X | LSU rRNA | C | 2017 | U | 2018 | U | 2020 | * | A | 1713 | G | 1718 | cWW | cWW |
| 4 | IL_5J7L_307 | 5J7L | 0.0922 | 5 | Intercalated tWH | DA | LSU rRNA | C | 1990 | U | 1991 | U | 1993 | * | A | 1669 | G | 1674 | cWW | cWW |
| 5 | IL_7A0S_062 | 7A0S | 0.0951 | 5 | Intercalated tWH | X | LSU rRNA | C | 1973 | U | 1974 | U | 1976 | * | A | 1686 | G | 1691 | cWW | cWW |
| 6 | IL_7RQB_067 | 7RQB | 0.0000 | 5 | Intercalated tWH | 1A | LSU rRNA | C | 1990 | U | 1991 | U | 1993 | * | A | 1669 | G | 1674 | cWW | cWW |
| 7 | IL_7A0S_044 | 7A0S | 0.5550 | 1 | Intercalated cWW | X | LSU rRNA | G | 1241 | A | 1242 | G | 1243 | * | U | 1232 | C | 1234 | cWW | cWW |
| 8 | IL_4WF9_047 | 4WF9 | 0.7905 | 1 | Intercalated cWW | X | LSU rRNA | G | 1266 | A | 1267 | C | 1268 | * | G | 1257 | U | 1259 | cWW | cWW |
| 9 | IL_5VCI_005 | 5VCI | 0.6605 | 0 | Not an internal loop | A+B | RNA (22-mer) + RNA (12-mer) | G | 13 | C | 14 | C | 15 | * | G | 22 | C | 1 | cWW | cWW |
| 10 | IL_2O3X_001 | 2O3X | 0.7219 | 1 | Stack and bulge | B+A | RNA (23-mer) | G | 42 | U | 43 | C | 44 | * | G | 5 | C | 7 | cWW | cWW |
| 11 | IL_2ET8_001 | 2ET8 | 0.7188 | 1 | Stack and bulge | B+A | RNA (22-mer) | G | 41 | U | 42 | C | 43 | * | G | 4 | C | 6 | cWW | cWW |
| 12 | IL_2O3X_003 | 2O3X | 0.6374 | 2 | Decoding loop related | B+A | RNA (23-mer) | C | 30 | A | 31 | C | 32 | * | G | 16 | G | 19 | cWW | cWW |
| 13 | IL_7A0S_092 | 7A0S | 0.8901 | 2 | Other IL | X | LSU rRNA | C | 2570 | G | 2571 | U | 2572 | * | A | 2579 | G | 2582 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUC*GUC | 2 |
| CUGU*AGUCGG | 1 |
| CUGU*AUUCGG | 1 |
| CUGU*ACUCGG | 1 |
| CUGU*ACUAGG | 1 |
| CUGU*ACUUUG | 1 |
| CUGU*ACUCUG | 1 |
| GAG*UAC | 1 |
| GAC*GAU | 1 |
| GCC*GC | 1 |
| CAC*GAAG | 1 |
| CGU*ACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 2 |
| U*U | 2 |
| UG*GUCG | 1 |
| UG*UUCG | 1 |
| UG*CUCG | 1 |
| UG*CUAG | 1 |
| UG*CUUU | 1 |
| UG*CUCU | 1 |
| C* | 1 |
| A*AA | 1 |
| G*CA | 1 |
- Annotations
-
- Intercalated tWH (6)
- Stack and bulge (2)
- Intercalated cWW (2)
- Decoding loop related (1)
- Not an internal loop (1)
- Other IL (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.47 | Max 0.94
Coloring options: