Motif IL_86221.1 Version IL_86221.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_105 | 2QBG | 0.1841 | 1 | B | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | G | 2742 | * | C | 2762 | G | 2763 | A | 2764 | A | 2766 | C | 2767 | cWW | cwW | tWH | tHS | cWW | |
| 2 | IL_3PYO_094 | 3PYO | 0.0000 | 1 | A | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | C | 2742 | * | G | 2762 | G | 2763 | A | 2764 | G | 2766 | C | 2767 | cWW | cWW | tWH | tHS | cWW | |
| 3 | IL_2ZJR_099 | 2ZJR | 0.1034 | 1 | UAA/GAN with extra cWW (H) | X | G | 2717 | A | 2718 | U | 2719 | A | 2720 | A | 2721 | C | 2722 | * | G | 2742 | G | 2743 | A | 2744 | G | 2746 | C | 2747 | cWW | cWW | tWH | tHS | cWW |
| 4 | IL_1S72_094 | 1S72 | 0.2164 | 1 | UAA/GAN with extra cWW (H) | 0 | G | 2772 | G | 2773 | U | 2774 | A | 2775 | A | 2776 | G | 2777 | * | C | 2797 | G | 2798 | A | 2799 | A | 2801 | C | 2802 | cWW | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAC*GGAAGC | 2 |
| GAUAAG*CGAAAC | 1 |
| GGUAAG*CGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAA*GAAG | 2 |
| AUAA*GAAA | 1 |
| GUAA*GAAA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_86221.1 | Only in the parent motif |
|---|---|---|---|
| IL_26097.3 Compare | IL_2ZJR_099, IL_1S72_094 | IL_3PYO_094, IL_2QBG_105 | IL_1S72_019, IL_3F1H_060, IL_3F1H_104 |
Children motifs
| Child motif | Common motif instances | Only in IL_86221.1 | Only in the child motif |
|---|---|---|---|
| IL_97057.1 Compare | IL_2QBG_105, IL_1S72_094, IL_2ZJR_099 | IL_3PYO_094 | IL_1S72_019, IL_3UXR_103, IL_4A1B_054 |
- Annotations
-
- UAA/GAN with extra cWW (H) (2)
- (2)
- Basepair signature
- Heat map statistics
- Min 0.10 | Avg 0.14 | Max 0.23
Coloring options: