Motif IL_86933.2 Version IL_86933.2 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	break		8		9		10		11		12		13		14	1-14	2-13	3-12	4-11	5-10	6-9	6-10	7-8
1	IL_4W21_019	4W21	0.1710		5+8	28S ribosomal RNA + 5.8S ribosomal RNA	G	415	U	416	G	417	A	418	A	419	A	420	C	421	*	G	13	U	14	G	15	G	16	A	17	U	18	C	19	cWW	cwW	tSH	tHS	tHS	ntHS		cWW
2	IL_1S72_001	1S72	0.1447	Triple sheared with non-canonical cWW (H)	0	LSU rRNA	A	516	U	517	G	518	A	519	A	520	A	521	U	522	*	G	21	U	22	G	23	G	24	A	25	U	26	U	27	cWW	cwW	tSH	tHS	tHS			cWW
3	IL_3U5H_016	3U5H	0.1291		5+8	25S rRNA + 5.8S rRNA	G	404	U	405	G	406	A	407	A	408	A	409	U	410	*	A	13	C	14	G	15	G	16	A	17	U	18	C	19	cWW	cwW	ntSH	tHS	tHS	ntHS	ncWS	cWW
4	IL_4CUV_019	4CUV	0.1706		1+4	25S RRNA + 5.8S RRNA	G	404	U	405	G	406	A	407	A	408	A	409	U	410	*	A	13	C	14	G	15	G	16	A	17	U	18	C	19	cWW	cwW	ntSH	ntHS	tHS	ntHS		cWW
5	IL_1VX6_018	1VX6	0.0897		A+C	28S ribosomal RNA + 5.8S ribosomal RNA	C	414	U	415	G	416	A	417	A	418	A	419	U	420	*	A	17	U	18	G	19	G	20	A	21	U	22	G	23	cWW	cwW	tSH	tHS	tHS	ntHS		cWW
6	IL_4IOA_001	4IOA	0.0728	Triple sheared with non-canonical cWW (H)	X	LSU rRNA	C	520	U	521	G	522	A	523	A	524	A	525	C	526	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH	tHS	tHS	ntHS		cWW
7	IL_4QCN_001	4QCN	0.0000		A	23S Ribosomal RNA	C	535	U	536	G	537	A	538	A	539	A	540	C	541	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH	tHS	tHS		ncWS	cWW
8	IL_2QBG_006	2QBG	0.0826		B	23S rRNA	C	510	U	511	G	512	A	513	A	514	A	515	C	516	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH	tHS	tHS	ntHS	ncWS	cWW
9	IL_4CUX_013	4CUX	0.6465		2	18S RRNA	G	195	G	196	A	197	A	198	G	199	A	200	G	201	*	C	184	U	185	C	186	G	187	A	188	C	189	C	190	ncWW				ncWW	ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGAAAC*GUGGAUG	3
GUGAAAU*ACGGAUC	2
GUGAAAC*GUGGAUC	1
AUGAAAU*GUGGAUU	1
CUGAAAU*AUGGAUG	1
CUCGACC*GGAAGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAAA*UGGAU	6
UGAAA*CGGAU	2
UCGAC*GAAGA	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_86933.2	Only in the parent motif
IL_86933.1 Compare	IL_1VX6_018, IL_1S72_001, IL_4QCN_001, IL_4CUX_013, IL_4CUV_019, IL_2QBG_006, IL_3U5H_016, IL_4IOA_001	IL_4W21_019	IL_1VWW_019, IL_1VX2_049, IL_1VWW_048

Children motifs

This motif has no children motifs.

Annotations: (7)
Triple sheared with non-canonical cWW (H) (2)
Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW
Heat map statistics: Min 0.07 | Avg 0.23 | Max 0.72

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Coloring options: Nucleotide numbers

Motif IL_86933.2 Version IL_86933.2 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_86933.2 Version IL_86933.2 of this group appears in releases 1.18 to 1.18

Download

Csv

Json