Motif IL_86933.2 Version IL_86933.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 6-10 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4W21_019 | 4W21 | 0.1710 | 0 | 5+8 | LSU rRNA + 5.8S rRNA | G | 415 | U | 416 | G | 417 | A | 418 | A | 419 | A | 420 | C | 421 | * | G | 13 | U | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW | ||
| 2 | IL_1S72_001 | 1S72 | 0.1447 | 0 | Triple sheared with non-canonical cWW (H) | 0 | LSU rRNA | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | * | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | cWW | cwW | tSH | tHS | tHS | cWW | ||
| 3 | IL_3U5H_016 | 3U5H | 0.1291 | 0 | 5+8 | LSU rRNA + 5.8S rRNA | G | 404 | U | 405 | G | 406 | A | 407 | A | 408 | A | 409 | U | 410 | * | A | 13 | C | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | cWW | cwW | ntSH | tHS | tHS | ntHS | ncWS | cWW | |
| 4 | IL_4CUV_019 | 4CUV | 0.1706 | 0 | 1+4 | LSU rRNA + 5.8S rRNA | G | 404 | U | 405 | G | 406 | A | 407 | A | 408 | A | 409 | U | 410 | * | A | 13 | C | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | cWW | cwW | ntSH | ntHS | tHS | ntHS | cWW | ||
| 5 | IL_1VX6_018 | 1VX6 | 0.0897 | 0 | A+C | LSU rRNA + 5.8S rRNA | C | 414 | U | 415 | G | 416 | A | 417 | A | 418 | A | 419 | U | 420 | * | A | 17 | U | 18 | G | 19 | G | 20 | A | 21 | U | 22 | G | 23 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW | ||
| 6 | IL_4IOA_001 | 4IOA | 0.0728 | 0 | Triple sheared with non-canonical cWW (H) | X | LSU rRNA | C | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | C | 526 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW | |
| 7 | IL_4QCN_001 | 4QCN | 0.0000 | 0 | A | LSU rRNA | C | 535 | U | 536 | G | 537 | A | 538 | A | 539 | A | 540 | C | 541 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | tSH | tHS | tHS | ncWS | cWW | ||
| 8 | IL_2QBG_006 | 2QBG | 0.0826 | 0 | B | LSU rRNA | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | tSH | tHS | tHS | ntHS | ncWS | cWW | |
| 9 | IL_4CUX_013 | 4CUX | 0.6465 | 0 | 2 | SSU rRNA | G | 195 | G | 196 | A | 197 | A | 198 | G | 199 | A | 200 | G | 201 | * | C | 184 | U | 185 | C | 186 | G | 187 | A | 188 | C | 189 | C | 190 | ncWW | ncWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAAAC*GUGGAUG | 3 |
| GUGAAAU*ACGGAUC | 2 |
| GUGAAAC*GUGGAUC | 1 |
| AUGAAAU*GUGGAUU | 1 |
| CUGAAAU*AUGGAUG | 1 |
| CUCGACC*GGAAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAA*UGGAU | 6 |
| UGAAA*CGGAU | 2 |
| UCGAC*GAAGA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_86933.2 | Only in the parent motif |
|---|---|---|---|
| IL_86933.1 Compare | IL_1VX6_018, IL_1S72_001, IL_4QCN_001, IL_4CUX_013, IL_4CUV_019, IL_2QBG_006, IL_3U5H_016, IL_4IOA_001 | IL_4W21_019 | IL_1VWW_019, IL_1VX2_049, IL_1VWW_048 |
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Triple sheared with non-canonical cWW (H) (2)
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Heat map statistics
- Min 0.07 | Avg 0.23 | Max 0.72
Coloring options: