Motif IL_87507.1 Version IL_87507.1 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_029 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | G | 704 | A | 705 | U | 706 | A | 707 | G | 708 | * | C | 721 | G | 722 | C | 724 | C | 725 | cWW | ntHW | ncWW | tHS | cWW | |
| 2 | IL_3V2F_026 | 3V2F | 0.9286 | 0 | A | 23S Ribosomal RNA | C | 846 | U | 847 | G | 848 | A | 849 | C | 850 | * | G | 927 | G | 928 | U | 930 | G | 931 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAG*CGUCC | 1 |
| CUGAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*GUC | 1 |
| UGA*GU | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87507.1 | Only in the parent motif |
|---|---|---|---|
| IL_49550.1 Compare | IL_4A1B_029 | IL_3V2F_026 | IL_4A1B_075 |
| IL_10647.1 Compare | IL_3V2F_026 | IL_4A1B_029 | IL_4A1B_097, IL_3V2F_043 |
Children motifs
| Child motif | Common motif instances | Only in IL_87507.1 | Only in the child motif |
|---|---|---|---|
| IL_87064.1 Compare | IL_4A1B_029 | IL_3V2F_026 | IL_4NVV_028 |
- Annotations
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Heat map statistics
- Min 0.93 | Avg 0.46 | Max 0.93
Coloring options: