Motif IL_14901.1 Version IL_14901.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1J2B_001 | 1J2B | 0.0000 | 0 | C | tRNA(Val) | C | 926 | G | 927 | C | 928 | C | 929 | * | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | cWW | cWW | ||
| 2 | IL_4A1B_029 | 4A1B | 0.9212 | 1 | 1 | 26S RRNA | C | 721 | G | 722 | C | 724 | C | 725 | * | G | 704 | A | 705 | U | 706 | A | 707 | G | 708 | cWW | tSH | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCC*GGAGG | 1 |
| CGUCC*GAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*GAG | 1 |
| GUC*AUA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_14901.1 | Only in the parent motif |
|---|---|---|---|
| IL_87064.1 Compare | IL_4A1B_029 | IL_1J2B_001 | IL_4NVV_028 |
| IL_52173.1 Compare | IL_1J2B_001 | IL_4A1B_029 | IL_1MFQ_001, IL_1U6B_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_14901.1 | Only in the child motif |
|---|---|---|---|
| IL_38488.1 Compare | IL_4A1B_029 | IL_1J2B_001 | IL_1Y0Q_002 |
| IL_10743.1 Compare | IL_1J2B_001 | IL_4A1B_029 | IL_1MFQ_001, IL_1VX2_015, IL_1U6B_004, IL_4CUV_104, IL_1VWW_129 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-L-cWW
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
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