Motif IL_17204.2 Version IL_17204.2 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_129 | 4CUV | 0.9175 | 2 | 1 | LSU rRNA | U | 3054 | U | 3055 | U | 3057 | G | 3059 | * | C | 3084 | G | 3085 | A | 3086 | A | 3087 | G | 3088 | cWW | ntWH | cWW | ||
| 2 | IL_3CUN_001 | 3CUN | 0.0000 | 1 | C | RNA (92-MER) | C | 22 | A | 23 | G | 24 | G | 25 | * | U | 44 | A | 45 | U | 47 | G | 48 | G | 49 | cWW | cWW | cWB | cWW | |
| 3 | IL_4A1B_075 | 4A1B | 0.8936 | 2 | 1 | LSU rRNA | C | 1726 | U | 1727 | A | 1728 | G | 1730 | * | U | 1763 | G | 1764 | U | 1765 | A | 1766 | G | 1768 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUUG*CGAAG | 1 |
| CAGG*UAUUGG | 1 |
| CUAUG*UGUAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUU*GAA | 1 |
| AG*AUUG | 1 |
| UAU*GUAU | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_17204.2 | Only in the parent motif |
|---|---|---|---|
| IL_17204.1 Compare | IL_4A1B_075, IL_4CUV_129 | IL_3CUN_001 | |
| IL_38328.1 Compare | IL_3CUN_001 | IL_4A1B_075, IL_4CUV_129 | IL_1Y0Q_002, IL_1U6B_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_17204.2 | Only in the child motif |
|---|---|---|---|
| IL_77152.1 Compare | IL_3CUN_001 | IL_4CUV_129, IL_4A1B_075 | IL_1Y0Q_002, IL_1U6B_004, IL_3J7A_010 |
| IL_87433.1 Compare | IL_4A1B_075 | IL_4CUV_129, IL_3CUN_001 | IL_4A1B_029 |
| IL_66408.1 Compare | IL_4CUV_129 | IL_4A1B_075, IL_3CUN_001 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-R-L-cWW
- Heat map statistics
- Min 0.89 | Avg 0.62 | Max 1.00
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