Motif IL_38488.1 Version IL_38488.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_029 | 4A1B | 0.0000 | 1 | 1 | LSU rRNA | G | 704 | A | 705 | U | 706 | A | 707 | G | 708 | * | C | 721 | G | 722 | C | 724 | C | 725 | cWW | tHW | tHS | cWW |
| 2 | IL_1Y0Q_002 | 1Y0Q | 0.8820 | 0 | A | Group I catalytic intron | U | 92 | A | 93 | A | 94 | G | 95 | C | 96 | * | G | 111 | A | 112 | A | 113 | A | 114 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAG*CGUCC | 1 |
| UAAGC*GAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*GUC | 1 |
| AAG*AA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_38488.1 | Only in the parent motif |
|---|---|---|---|
| IL_14901.1 Compare | IL_4A1B_029 | IL_1Y0Q_002 | IL_1J2B_001 |
| IL_38328.1 Compare | IL_1Y0Q_002 | IL_4A1B_029 | IL_1U6B_004, IL_3CUN_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_38488.1 | Only in the child motif |
|---|---|---|---|
| IL_77152.1 Compare | IL_1Y0Q_002 | IL_4A1B_029 | IL_1U6B_004, IL_3J7A_010, IL_3CUN_001 |
| IL_87433.1 Compare | IL_4A1B_029 | IL_1Y0Q_002 | IL_4A1B_075 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-L-L-cWW
- Heat map statistics
- Min 0.88 | Avg 0.44 | Max 0.88
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