Motif IL_10647.1 Version IL_10647.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_097 | 4A1B | 0.7549 | 1 | 1 | 26S RRNA | U | 2418 | A | 2419 | G | 2420 | U | 2421 | * | G | 2592 | G | 2593 | G | 2594 | G | 2596 | cWW | tHS | tHS | cWW |
| 2 | IL_3V2F_043 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | U | 1240 | A | 1241 | A | 1242 | G | 1243 | * | C | 1202 | G | 1203 | A | 1204 | G | 1206 | cWW | tHS | cWW | |
| 3 | IL_3V2F_026 | 3V2F | 0.8276 | 1 | A | 23S Ribosomal RNA | C | 846 | G | 848 | A | 849 | C | 850 | * | G | 927 | G | 928 | U | 930 | G | 931 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGU*GGGGG | 1 |
| UAAG*CGAUG | 1 |
| CUGAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AG*GGG | 1 |
| AA*GAU | 1 |
| UGA*GU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | > 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_10647.1 | Only in the parent motif |
|---|---|---|---|
| IL_57216.1 Compare | IL_3V2F_043 | IL_4A1B_097, IL_3V2F_026 | IL_2QBG_057, IL_3BNQ_005 |
| IL_63837.1 Compare | IL_4A1B_097 | IL_3V2F_026, IL_3V2F_043 | |
| IL_79870.1 Compare | IL_3V2F_026 | IL_4A1B_097, IL_3V2F_043 | IL_4A1B_029 |
Children motifs
| Child motif | Common motif instances | Only in IL_10647.1 | Only in the child motif |
|---|---|---|---|
| IL_54470.1 Compare | IL_4A1B_097 | IL_3V2F_026, IL_3V2F_043 | |
| IL_05684.1 Compare | IL_3V2F_043 | IL_4A1B_097, IL_3V2F_026 | IL_3BNP_003, IL_3BNP_002, IL_3BNQ_005, IL_2QBG_057 |
| IL_87507.1 Compare | IL_3V2F_026 | IL_4A1B_097, IL_3V2F_043 | IL_4A1B_029 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-tHS-cWW
- Heat map statistics
- Min 0.75 | Avg 0.54 | Max 0.85
Coloring options: