Motif IL_49550.1 Version IL_49550.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_029 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | G | 704 | A | 705 | U | 706 | A | 707 | G | 708 | * | C | 721 | G | 722 | C | 724 | C | 725 | cWW | tHW | tHS | cWW |
| 2 | IL_4A1B_075 | 4A1B | 0.9384 | 2 | 1 | 26S RRNA | U | 1763 | G | 1764 | U | 1765 | A | 1766 | G | 1768 | * | C | 1726 | U | 1727 | A | 1728 | G | 1730 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAG*CGUCC | 1 |
| UGUAUG*CUAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*GUC | 1 |
| GUAU*UAU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_49550.1 | Only in the parent motif |
|---|---|---|---|
| IL_06635.1 Compare | IL_4A1B_075 | IL_4A1B_029 | IL_3U5F_007 |
| IL_79870.1 Compare | IL_4A1B_029 | IL_4A1B_075 | IL_3V2F_026 |
Children motifs
| Child motif | Common motif instances | Only in IL_49550.1 | Only in the child motif |
|---|---|---|---|
| IL_87507.1 Compare | IL_4A1B_029 | IL_4A1B_075 | IL_3V2F_026 |
| IL_06180.1 Compare | IL_4A1B_075 | IL_4A1B_029 | IL_3U5F_007, IL_4BPP_007 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-L-L-cWW
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: