Motif IL_88739.2 Version IL_88739.2 of this group appears in releases 3.85 to 3.85

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	2-5	3-4
1	IL_3RW6_003	3RW6	0.8263	1	Minor groove platform	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	U	38	A	40	U	41	*	A	20	G	21	cWW	tHS	cWW
2	IL_5J7L_048	5J7L	0.6842	2	Minor groove platform	AA	SSU rRNA	U	1199	U	1202	C	1203	*	G	1057	G	1058	cWW	tHS	cWW
3	IL_4LFB_045	4LFB	0.6684	2	Minor groove platform	A	SSU rRNA	U	1199	G	1202	C	1203	*	G	1057	G	1058	cWW	tHS	cWW
4	IL_6CZR_155	6CZR	0.6423	2	Minor groove platform	1a	SSU rRNA	U	1181	G	1184	C	1185	*	G	1040	G	1041	cWW	ntHS	cWW
5	IL_7A0S_068	7A0S	0.4891	1	Major groove minor groove platform; mini C-loop	X	LSU rRNA	G	1838	A	1840	G	1841	*	C	1876	C	1877	cWW	ncWS	cWW
6	IL_7RQB_073	7RQB	0.3889	1	Minor groove platform	1A	LSU rRNA	G	1846	A	1848	G	1849	*	C	1893	C	1894	cWW	ncWS	cWW
7	IL_1U9S_005	1U9S	0.2439	1	Minor groove platform, major groove intercalation	A	RIBONUCLEASE P	C	136	G	138	C	139	*	G	161	G	162	cWW	ntHS	cWW
8	IL_5J7L_314	5J7L	0.1712	1	Minor groove platform, major groove intercalation	DA	LSU rRNA	C	1837	G	1839	G	1840	*	C	1902	G	1903	cWW	ntHS	cWW
9	IL_7A0S_066	7A0S	0.0000	1	Minor groove platform, major groove intercalation	X	LSU rRNA	C	1829	G	1831	G	1832	*	C	1885	G	1886	cWW		cWW
10	IL_8C3A_089	8C3A	0.1821	1	Major groove intercalation (H)	1	LSU rRNA	C	2174	A	2176	G	2177	*	C	2223	G	2224	cWW		cWW
11	IL_5TBW_084	5TBW	0.1908	1	Major groove intercalation	1	LSU rRNA	C	2196	A	2198	G	2199	*	C	2245	G	2246	cWW		cWW
12	IL_7RQB_071	7RQB	0.2102	1	Minor groove platform, major groove intercalation	1A	LSU rRNA	C	1837	G	1839	G	1840	*	C	1902	G	1903	cWW		cWW
13	IL_4V9F_066	4V9F	0.2072	1	Minor groove platform, major groove intercalation	0	LSU rRNA	C	1893	A	1895	G	1896	*	C	1943	G	1944	cWW		cWW
14	IL_1U9S_002	1U9S	0.5225	2	Major groove intercalation	A	RIBONUCLEASE P	G	111	A	114	G	115	*	C	228	C	229	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCGG*CG	3
CCAG*CG	3
UCAGC*GG	2
GAAG*CC	2
UAAU*AG	1
UCAUC*GG	1
CAGC*GG	1
GAAAG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	3
CG*	3
CA*	3
CAG*	2
CAU*	1
AG*	1
AAA*	1

Release history

Release	3.85
Date	2024-06-19
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Minor groove platform, major groove intercalation (5)
Minor groove platform (5)
Major groove intercalation (2)
Major groove minor groove platform; mini C-loop (1)
Major groove intercalation (H) (1)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.10 | Avg 0.40 | Max 0.85

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