#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 6 7 8break 9 101-105-65-78-9
1 IL_4BPP_0294BPP0.27940A18S RRNAA543G544G545G546C547A548A549G550*C581U582cWWcSHcWW
2 IL_3U5F_0303U5F0.29820618S rRNAA550G551G552G553C554A555A556G557*C587U588cWWcSHcWW
3 IL_3J7A_0243J7A0.27840SSU/LSU pseudoknot (H)A SSU rRNAA557G558G559G560C561A562A563G564*C594U595cWWcSHcWW
4 IL_1FJG_0201FJG0.24220SSU/LSU pseudoknot (H)A SSU rRNAC504G505G506C507C508A509A510C511*G540G541cWWncSHntSWcWW
5 IL_2AW7_0272AW70.24050A16S ribosomal RNAC504G505G506C507U508A509A510C511*G540G541cWWcWW
6 IL_4A1B_0554A1B0.00000126S RRNAC1200G1201C1202C1203C1204A1205A1206A1207*U1352G1353cWWcSHcWW
7 IL_1S72_0391S720.16450SSU/LSU pseudoknot (H)0 LSU rRNAU1101C1102C1103C1104C1105A1106A1107G1108*C1254A1255cWWcSHcWW
8 IL_4QCN_0364QCN0.17020A23S Ribosomal RNAC1050C1051C1052C1053C1054A1055A1056G1057*C1196G1197cWWcSHcWW
9 IL_4IOA_0334IOA0.19090SSU/LSU pseudoknotX LSU rRNAU1015C1016C1017C1018U1019A1020A1021A1022*U1161A1162cWWcSHcWW
10 IL_2QBG_0372QBG0.21730B23S rRNAU1004C1005C1006C1007A1008A1009A1010G1011*C1150A1151cWWncSHcWW
11 IL_3U5H_0543U5H0.34680525S rRNAU1173G1174C1175C1176G1177G1178A1179A1180*U1325A1326cWWchHcWW
12 IL_4CUV_0554CUV0.34530125S RRNAU1173G1174C1175C1176G1177G1178A1179A1180*U1325A1326cWWnchHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGGGCAAG*CU3
UGCCGGAA*UA2
CGGCCAAC*GG1
CGGCUAAC*GG1
CGCCCAAA*UG1
UCCCCAAG*CA1
CCCCCAAG*CG1
UCCCUAAA*UA1
UCCCAAAG*CA1
Non-Watson-Crick part of the motif
SequenceCounts
GGGCAA*3
CCCCAA*2
GCCGGA*2
GGCCAA*1
GGCUAA*1
GCCCAA*1
CCCUAA*1
CCCAAA*1
Annotations
  • (8)
  • SSU/LSU pseudoknot (H) (3)
  • SSU/LSU pseudoknot (1)
  • Basepair signature
    cWW-L-L-L-cSH-L-cWW
    Heat map statistics
    Min 0.08 | Avg 0.26 | Max 0.43
    Help

    Coloring options:

    IL_4BPP_029:IL_4BPP_029 = 0IL_4BPP_029:IL_3U5F_030 = 0.0874IL_4BPP_029:IL_3J7A_024 = 0.0963IL_4BPP_029:IL_1FJG_020 = 0.2766IL_4BPP_029:IL_2AW7_027 = 0.2719IL_4BPP_029:IL_4A1B_055 = 0.2794IL_4BPP_029:IL_1S72_039 = 0.2822IL_4BPP_029:IL_4QCN_036 = 0.3081IL_4BPP_029:IL_4IOA_033 = 0.3139IL_4BPP_029:IL_2QBG_037 = 0.3102IL_4BPP_029:IL_3U5H_054 = 0.4148IL_4BPP_029:IL_4CUV_055 = 0.423IL_3U5F_030:IL_4BPP_029 = 0.0874IL_3U5F_030:IL_3U5F_030 = 0IL_3U5F_030:IL_3J7A_024 = 0.0799IL_3U5F_030:IL_1FJG_020 = 0.2734IL_3U5F_030:IL_2AW7_027 = 0.2724IL_3U5F_030:IL_4A1B_055 = 0.2982IL_3U5F_030:IL_1S72_039 = 0.3036IL_3U5F_030:IL_4QCN_036 = 0.3279IL_3U5F_030:IL_4IOA_033 = 0.3306IL_3U5F_030:IL_2QBG_037 = 0.3256IL_3U5F_030:IL_3U5H_054 = 0.4283IL_3U5F_030:IL_4CUV_055 = 0.4282IL_3J7A_024:IL_4BPP_029 = 0.0963IL_3J7A_024:IL_3U5F_030 = 0.0799IL_3J7A_024:IL_3J7A_024 = 0IL_3J7A_024:IL_1FJG_020 = 0.2582IL_3J7A_024:IL_2AW7_027 = 0.2602IL_3J7A_024:IL_4A1B_055 = 0.2784IL_3J7A_024:IL_1S72_039 = 0.2851IL_3J7A_024:IL_4QCN_036 = 0.3178IL_3J7A_024:IL_4IOA_033 = 0.3305IL_3J7A_024:IL_2QBG_037 = 0.3315IL_3J7A_024:IL_3U5H_054 = 0.42IL_3J7A_024:IL_4CUV_055 = 0.4188IL_1FJG_020:IL_4BPP_029 = 0.2766IL_1FJG_020:IL_3U5F_030 = 0.2734IL_1FJG_020:IL_3J7A_024 = 0.2582IL_1FJG_020:IL_1FJG_020 = 0IL_1FJG_020:IL_2AW7_027 = 0.0903IL_1FJG_020:IL_4A1B_055 = 0.2422IL_1FJG_020:IL_1S72_039 = 0.2593IL_1FJG_020:IL_4QCN_036 = 0.3074IL_1FJG_020:IL_4IOA_033 = 0.3478IL_1FJG_020:IL_2QBG_037 = 0.3469IL_1FJG_020:IL_3U5H_054 = 0.4102IL_1FJG_020:IL_4CUV_055 = 0.4262IL_2AW7_027:IL_4BPP_029 = 0.2719IL_2AW7_027:IL_3U5F_030 = 0.2724IL_2AW7_027:IL_3J7A_024 = 0.2602IL_2AW7_027:IL_1FJG_020 = 0.0903IL_2AW7_027:IL_2AW7_027 = 0IL_2AW7_027:IL_4A1B_055 = 0.2405IL_2AW7_027:IL_1S72_039 = 0.2553IL_2AW7_027:IL_4QCN_036 = 0.2966IL_2AW7_027:IL_4IOA_033 = 0.3411IL_2AW7_027:IL_2QBG_037 = 0.3314IL_2AW7_027:IL_3U5H_054 = 0.3767IL_2AW7_027:IL_4CUV_055 = 0.3948IL_4A1B_055:IL_4BPP_029 = 0.2794IL_4A1B_055:IL_3U5F_030 = 0.2982IL_4A1B_055:IL_3J7A_024 = 0.2784IL_4A1B_055:IL_1FJG_020 = 0.2422IL_4A1B_055:IL_2AW7_027 = 0.2405IL_4A1B_055:IL_4A1B_055 = 0IL_4A1B_055:IL_1S72_039 = 0.1645IL_4A1B_055:IL_4QCN_036 = 0.1702IL_4A1B_055:IL_4IOA_033 = 0.1909IL_4A1B_055:IL_2QBG_037 = 0.2173IL_4A1B_055:IL_3U5H_054 = 0.3468IL_4A1B_055:IL_4CUV_055 = 0.3453IL_1S72_039:IL_4BPP_029 = 0.2822IL_1S72_039:IL_3U5F_030 = 0.3036IL_1S72_039:IL_3J7A_024 = 0.2851IL_1S72_039:IL_1FJG_020 = 0.2593IL_1S72_039:IL_2AW7_027 = 0.2553IL_1S72_039:IL_4A1B_055 = 0.1645IL_1S72_039:IL_1S72_039 = 0IL_1S72_039:IL_4QCN_036 = 0.1277IL_1S72_039:IL_4IOA_033 = 0.1953IL_1S72_039:IL_2QBG_037 = 0.1965IL_1S72_039:IL_3U5H_054 = 0.3562IL_1S72_039:IL_4CUV_055 = 0.368IL_4QCN_036:IL_4BPP_029 = 0.3081IL_4QCN_036:IL_3U5F_030 = 0.3279IL_4QCN_036:IL_3J7A_024 = 0.3178IL_4QCN_036:IL_1FJG_020 = 0.3074IL_4QCN_036:IL_2AW7_027 = 0.2966IL_4QCN_036:IL_4A1B_055 = 0.1702IL_4QCN_036:IL_1S72_039 = 0.1277IL_4QCN_036:IL_4QCN_036 = 0IL_4QCN_036:IL_4IOA_033 = 0.1087IL_4QCN_036:IL_2QBG_037 = 0.1197IL_4QCN_036:IL_3U5H_054 = 0.3573IL_4QCN_036:IL_4CUV_055 = 0.3661IL_4IOA_033:IL_4BPP_029 = 0.3139IL_4IOA_033:IL_3U5F_030 = 0.3306IL_4IOA_033:IL_3J7A_024 = 0.3305IL_4IOA_033:IL_1FJG_020 = 0.3478IL_4IOA_033:IL_2AW7_027 = 0.3411IL_4IOA_033:IL_4A1B_055 = 0.1909IL_4IOA_033:IL_1S72_039 = 0.1953IL_4IOA_033:IL_4QCN_036 = 0.1087IL_4IOA_033:IL_4IOA_033 = 0IL_4IOA_033:IL_2QBG_037 = 0.1001IL_4IOA_033:IL_3U5H_054 = 0.3618IL_4IOA_033:IL_4CUV_055 = 0.3599IL_2QBG_037:IL_4BPP_029 = 0.3102IL_2QBG_037:IL_3U5F_030 = 0.3256IL_2QBG_037:IL_3J7A_024 = 0.3315IL_2QBG_037:IL_1FJG_020 = 0.3469IL_2QBG_037:IL_2AW7_027 = 0.3314IL_2QBG_037:IL_4A1B_055 = 0.2173IL_2QBG_037:IL_1S72_039 = 0.1965IL_2QBG_037:IL_4QCN_036 = 0.1197IL_2QBG_037:IL_4IOA_033 = 0.1001IL_2QBG_037:IL_2QBG_037 = 0IL_2QBG_037:IL_3U5H_054 = 0.3734IL_2QBG_037:IL_4CUV_055 = 0.3771IL_3U5H_054:IL_4BPP_029 = 0.4148IL_3U5H_054:IL_3U5F_030 = 0.4283IL_3U5H_054:IL_3J7A_024 = 0.42IL_3U5H_054:IL_1FJG_020 = 0.4102IL_3U5H_054:IL_2AW7_027 = 0.3767IL_3U5H_054:IL_4A1B_055 = 0.3468IL_3U5H_054:IL_1S72_039 = 0.3562IL_3U5H_054:IL_4QCN_036 = 0.3573IL_3U5H_054:IL_4IOA_033 = 0.3618IL_3U5H_054:IL_2QBG_037 = 0.3734IL_3U5H_054:IL_3U5H_054 = 0IL_3U5H_054:IL_4CUV_055 = 0.0901IL_4CUV_055:IL_4BPP_029 = 0.423IL_4CUV_055:IL_3U5F_030 = 0.4282IL_4CUV_055:IL_3J7A_024 = 0.4188IL_4CUV_055:IL_1FJG_020 = 0.4262IL_4CUV_055:IL_2AW7_027 = 0.3948IL_4CUV_055:IL_4A1B_055 = 0.3453IL_4CUV_055:IL_1S72_039 = 0.368IL_4CUV_055:IL_4QCN_036 = 0.3661IL_4CUV_055:IL_4IOA_033 = 0.3599IL_4CUV_055:IL_2QBG_037 = 0.3771IL_4CUV_055:IL_3U5H_054 = 0.0901IL_4CUV_055:IL_4CUV_055 = 0IL_4BPP_029IL_3U5F_030IL_3J7A_024IL_1FJG_020IL_2AW7_027IL_4A1B_055IL_1S72_039IL_4QCN_036IL_4IOA_033IL_2QBG_037IL_3U5H_054IL_4CUV_055Discrepancy0.000.100.200.300.40
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