Motif IL_90133.1 Version IL_90133.1 of this group appears in releases 0.9 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_006 | 2AW7 | 0.4335 | 0 | A | 16S ribosomal RNA | C | 67 | G | 68 | G | 69 | * | C | 99 | G | 100 | A | 101 | G | 102 | cWW | cWW | cWW | tSH | |
| 2 | IL_3U5F_028 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | G | 516 | U | 517 | A | 518 | * | U | 533 | A | 534 | A | 535 | C | 536 | cWW | ncWW | cWW | tSH | |
| 3 | IL_3V2F_031 | 3V2F | 0.3199 | 0 | A | 23S Ribosomal RNA | G | 875 | C | 876 | U | 877 | * | A | 899 | A | 900 | A | 901 | C | 902 | cWW | ncWW | cWW | tSH | |
| 4 | IL_1S72_053 | 1S72 | 0.5015 | 0 | 0 | LSU rRNA | A | 1465 | C | 1466 | C | 1467 | * | G | 1475 | A | 1476 | C | 1477 | U | 1478 | cWW | cWB | cWW | ||
| 5 | IL_3U5F_004 | 3U5F | 0.8242 | 3 | 6 | 18S rRNA | C | 431 | G | 432 | C | 433 | * | G | 42 | U | 45 | A | 46 | G | 48 | cWW | ntsS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGG*CGAG | 1 |
| GUA*UAAC | 1 |
| GCU*AAAC | 1 |
| ACC*GACU | 1 |
| CGC*GAUUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GA | 1 |
| U*AA | 1 |
| C*AA | 1 |
| C*AC | 1 |
| G*AUUAA | 1 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_90133.1 | Only in the parent motif |
|---|---|---|---|
| IL_07911.1 Compare | IL_3U5F_028, IL_3V2F_031, IL_2AW7_006 | IL_3U5F_004, IL_1S72_053 | IL_3BNL_003, IL_3U5F_068 |
| IL_64184.2 Compare | IL_3U5F_004, IL_1S72_053 | IL_3U5F_028, IL_3V2F_031, IL_2AW7_006 | IL_2AW7_003, IL_1FJG_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_90133.1 | Only in the child motif |
|---|---|---|---|
| IL_90133.2 Compare | IL_2AW7_006, IL_3U5F_028, IL_3V2F_031, IL_1S72_053 | IL_3U5F_004 | IL_4A1B_089, IL_4IOA_061 |
| IL_91273.1 Compare | IL_3U5F_004 | IL_2AW7_006, IL_3U5F_028, IL_3V2F_031, IL_1S72_053 | IL_2AW7_003 |
- Annotations
- Basepair signature
- cWW-bif-tSH-cWW
- Heat map statistics
- Min 0.32 | Avg 0.51 | Max 0.96
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