Motif IL_90133.2 Version IL_90133.2 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | 3-4 | 3-5 | 6-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_006 | 2AW7 | 0.6510 | 0 | A | 16S ribosomal RNA | C | 67 | G | 68 | G | 69 | * | C | 99 | G | 100 | A | 101 | G | 102 | cWW | cWW | cWW | tSH | ||
| 2 | IL_3U5F_028 | 3U5F | 0.5015 | 0 | 6 | 18S rRNA | G | 516 | U | 517 | A | 518 | * | U | 533 | A | 534 | A | 535 | C | 536 | cWW | ncWW | cWW | tSH | ||
| 3 | IL_3V2F_031 | 3V2F | 0.4223 | 0 | A | 23S Ribosomal RNA | G | 875 | C | 876 | U | 877 | * | A | 899 | A | 900 | A | 901 | C | 902 | cWW | ncWW | cWW | tSH | ||
| 4 | IL_1S72_053 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | A | 1465 | C | 1466 | C | 1467 | * | G | 1475 | A | 1476 | C | 1477 | U | 1478 | cWW | cWB | cWW | |||
| 5 | IL_4IOA_061 | 4IOA | 0.5973 | 1 | X | LSU rRNA | U | 1515 | A | 1516 | C | 1517 | * | G | 1503 | G | 1504 | U | 1505 | A | 1507 | cWW | cWW | cWW | ncWH | ||
| 6 | IL_4A1B_089 | 4A1B | 0.7775 | 1 | 1 | 26S RRNA | C | 2230 | G | 2231 | C | 2232 | * | G | 2201 | A | 2202 | A | 2203 | G | 2205 | cWW | ncWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGG*CGAG | 1 |
| GUA*UAAC | 1 |
| GCU*AAAC | 1 |
| ACC*GACU | 1 |
| UAC*GGUCA | 1 |
| CGC*GAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GA | 1 |
| U*AA | 1 |
| C*AA | 1 |
| C*AC | 1 |
| A*GUC | 1 |
| G*AAU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_90133.2 | Only in the parent motif |
|---|---|---|---|
| IL_90133.1 Compare | IL_2AW7_006, IL_3U5F_028, IL_3V2F_031, IL_1S72_053 | IL_4A1B_089, IL_4IOA_061 | IL_3U5F_004 |
| IL_27618.2 Compare | IL_4A1B_089 | IL_2AW7_006, IL_3U5F_028, IL_4IOA_061, IL_3V2F_031, IL_1S72_053 | IL_1X8W_009, IL_4A1B_093, IL_2ZJR_059, IL_3Q1Q_006, IL_3U5H_096, IL_1J2B_003, IL_3U5H_071, IL_1S72_072, IL_3NPB_004, IL_3U5H_012 |
Children motifs
| Child motif | Common motif instances | Only in IL_90133.2 | Only in the child motif |
|---|---|---|---|
| IL_90133.3 Compare | IL_3U5F_028, IL_2AW7_006, IL_3V2F_031, IL_1S72_053 | IL_4A1B_089, IL_4IOA_061 | IL_4BPP_066, IL_3U5F_068 |
| IL_31663.1 Compare | IL_4A1B_089, IL_4IOA_061 | IL_3U5F_028, IL_2AW7_006, IL_3V2F_031, IL_1S72_053 | IL_3U5H_096, IL_1S72_072 |
- Annotations
-
- (6)
- Basepair signature
- cWW-bif-cWW-tSH-cWW
- Heat map statistics
- Min 0.32 | Avg 0.56 | Max 0.99
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