Motif IL_90454.1 Version IL_90454.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-2 | 1-9 | 3-9 | 4-5 | 5-8 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1MJI_004 | 1MJI | 0 | 1 | Symmetric double minor groove platform | D | 5S rRNA fragment | A | 34 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
ACCCC*GAACU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CCC*AAC | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_90454.1 | Only in the child motif |
---|---|---|---|
IL_70237.1 Compare | IL_1MJI_004 | IL_1S72_102, IL_2QBG_004, IL_1MJI_002 |
- Annotations
-
- Symmetric double minor groove platform (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: