Motif IL_90991.2 Version IL_90991.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_033 | 5TBW | 0.1902 | 4 | Multiple bulged bases | 1 | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW |
| 2 | IL_4V8P_197 | 4V8P | 0.1798 | 4 | D1 | LSU rRNA | G | 932 | G | 934 | * | U | 944 | C | 948 | cWW | cWW | |
| 3 | IL_4IOA_020 | 4IOA | 0.0822 | 4 | Multiple bulged bases (H) | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW |
| 4 | IL_5J7L_265 | 5J7L | 0.0000 | 4 | Multiple bulged bases | DA | LSU rRNA | G | 775 | G | 777 | * | C | 787 | C | 791 | cWW | cWW |
| 5 | IL_4V9F_030 | 4V9F | 0.1102 | 4 | Multiple bulged bases | 0 | LSU rRNA | G | 868 | G | 870 | * | C | 880 | C | 884 | cWW | cWW |
| 6 | IL_4Y4O_200 | 4Y4O | 0.1040 | 4 | 2A | LSU rRNA | G | 775 | A | 777 | * | U | 787 | C | 791 | cWW | cWW | |
| 7 | IL_4WF9_027 | 4WF9 | 0.1395 | 4 | Multiple bulged bases | X | LSU rRNA | G | 820 | G | 822 | * | C | 832 | C | 836 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGG*UAAUC | 2 |
| GGA*UAACC | 2 |
| GGG*CAAUC | 1 |
| GGG*CCAUC | 1 |
| GCG*CAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AAU | 3 |
| G*AAC | 2 |
| G*CAU | 1 |
| C*AAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (4)
- (2)
- Multiple bulged bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.14 | Max 0.25
Coloring options: