Motif IL_90991.7 Version IL_90991.7 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_033 | 5TBW | 0.0724 | 4 | Multiple bulged bases | 1 | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW |
| 2 | IL_8C3A_036 | 8C3A | 0.0000 | 4 | Multiple bulged bases (H) | 1 | LSU rRNA | G | 903 | G | 905 | * | U | 915 | C | 919 | cWW | cWW |
| 3 | IL_4WF9_027 | 4WF9 | 0.1519 | 4 | Multiple bulged bases | X | LSU rRNA | G | 820 | G | 822 | * | C | 832 | C | 836 | cWW | cWW |
| 4 | IL_7A0S_021 | 7A0S | 0.1438 | 4 | Multiple bulged bases | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW |
| 5 | IL_5J7L_265 | 5J7L | 0.1415 | 4 | Multiple bulged bases | DA | LSU rRNA | G | 775 | G | 777 | * | C | 787 | C | 791 | cWW | cWW |
| 6 | IL_4V9F_030 | 4V9F | 0.1930 | 4 | Multiple bulged bases | 0 | LSU rRNA | G | 868 | G | 870 | * | C | 880 | C | 884 | cWW | cWW |
| 7 | IL_8VTW_022 | 8VTW | 0.1645 | 4 | Multiple bulged bases (H) | 1A | LSU rRNA | G | 775 | A | 777 | * | U | 787 | C | 791 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGG*UAAUC | 2 |
| GGA*UAACC | 2 |
| GCG*CAAUC | 1 |
| GGG*CAAUC | 1 |
| GGG*CCAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AAU | 3 |
| G*AAC | 2 |
| C*AAU | 1 |
| G*CAU | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (5)
- Multiple bulged bases (H) (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.21
Coloring options: