#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 5 61-41-62-32-42-53-54-54-6
1 IL_2QBG_0742QBG0.64550B23S rRNAC1893C1894*G1846A1847A1848G1849cWWcWWncSW
2 IL_1S72_0681S720.44470Major groove minor groove platform; mini C-loop (H)0 LSU rRNAA1934C1935*G1902U1903A1904U1905cWWcWW
3 IL_3U5F_0403U5F0.16000618S rRNAA746C747*G802A803A804U805cWWcWWcSH
4 IL_1FJG_0251FJG0.09930Major groove minor groove platform; mini C-loop (H)A SSU rRNAG597U598*A640U641A642C643cWWcWWcSHncSH
5 IL_1S03_0071S030.00000Major groove minor groove platform; mini C-loopB47-MERG37U38*A12A13A14C15ntHWcWWcWWncSWcSHncSH
6 IL_1I6U_0041I6U0.10670D16S RRNA FRAGMENTG12U13*A24U25A26C27cWWcWWncSWcSHncSH
7 IL_2AW7_0322AW70.12090A16S ribosomal RNAG597U598*A640U641A642C643cWWcWWncSWcSH
8 IL_4NVV_1094NVV0.24490B5S Ribosomal RNAC30C31*G51A52A53G54ncBWcWWcWWcSWncSH
9 IL_1S72_1011S720.24900Major groove minor groove platform; mini C-loop (H)9 5S rRNAC29C30*G50A51A52G53cWWcWWcSWcSH
10 IL_4A1C_0064A1C0.3262035S RRNAC28C29*G48A49A50G51cWWcWWncSW
11 IL_4IOA_0684IOA0.32340X LSU rRNAC1876C1877*G1838A1839A1840G1841ncWWcWWntSHncSH
12 IL_4A1B_0194A1B0.40860126S RRNAU469C470*G507A508A509A510ntHScWWncWWcSW
13 IL_1U9S_0041U9S0.60610Major groove minor groove platform; mini C-loopARIBONUCLEASE PC133G134*C164A165A166G167ncBWcWWcWWcSH
14 IL_3Q1Q_0053Q1Q0.56520BRNase P RNAC126G127*C148A149A150G151cWWcWWncWWncSHncSH
15 IL_1U9S_0021U9S0.56511Major groove outside cWW, minor groove, intercalation pocketARIBONUCLEASE PC228C229*G111A112A114G115cWWcWW
16 IL_3U5H_0913U5H0.55850525S rRNAC2245G2246*C2196C2197A2198G2199cWWcWW
17 IL_1VW3_0541VW30.51930A21S ribosomal RNAU1803A1804*U1745C1746C1747A1748cWWcWW
18 IL_1U9S_0051U9S0.51620Major groove outside cWW, minor groove, intercalation pocketARIBONUCLEASE PG161G162*C136A137G138C139cWWcWWntSH
19 IL_3TZR_0013TZR0.61863Major groove outside cWW, minor groove, intercalation pocketB+ARNA (16-mer)G110C111*G52A53A57C58cWWcWWncSW

3D structures

Complete motif including flanking bases
SequenceCounts
CC*GAAG5
GU*AUAC3
CG*CAAG2
AC*GUAU1
AC*GAAU1
GU*AAAC1
UC*GAAA1
CC*GAAAG1
CG*CCAG1
UA*UCCA1
GG*CAGC1
GC*GAACUAC1
Non-Watson-Crick part of the motif
SequenceCounts
*AA10
*UA4
*AAA1
*CA1
*CC1
*AG1
*AACUA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_92027.4Only in the child motif
IL_92027.5
Compare
IL_1S72_101, IL_1S03_007, IL_1U9S_005, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_3TZR_001, IL_1S72_068, IL_4A1C_006, IL_3Q1Q_005, IL_3U5H_091, IL_3U5F_040, IL_1VW3_054, IL_2AW7_032, IL_4IOA_068, IL_4NVV_109, IL_4A1B_019, IL_1I6U_004IL_4CUX_039, IL_4CUV_092
Annotations
  • (11)
  • Major groove minor groove platform; mini C-loop (H) (3)
  • Major groove outside cWW, minor groove, intercalation pocket (3)
  • Major groove minor groove platform; mini C-loop (2)
  • Basepair signature
    cWW-cSH-cSW-cWW
    Heat map statistics
    Min 0.10 | Avg 0.48 | Max 0.91
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