Motif IL_92027.3 Version IL_92027.3 of this group appears in releases 1.1 to 1.13

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5		6	1-4	1-6	2-3	2-4	2-5	3-5	4-5	4-6
1	IL_2QBG_074	2QBG	0.6455	0		B	23S rRNA	C	1893	C	1894	*	G	1846	A	1847	A	1848	G	1849		cWW	cWW		ncSW
2	IL_1S72_068	1S72	0.4447	0	Major groove minor groove platform; mini C-loop (H)	0	LSU rRNA	A	1934	C	1935	*	G	1902	U	1903	A	1904	U	1905		cWW	cWW
3	IL_3U5F_040	3U5F	0.1600	0		6	18S rRNA	A	746	C	747	*	G	802	A	803	A	804	U	805		cWW	cWW				cSH
4	IL_1FJG_025	1FJG	0.0993	0	Major groove minor groove platform; mini C-loop (H)	A	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW				cSH	ncSH
5	IL_1S03_007	1S03	0.0000	0	Major groove minor groove platform; mini C-loop	B	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW		ncSW		cSH	ncSH
6	IL_1I6U_004	1I6U	0.1067	0		D	16S RRNA FRAGMENT	G	12	U	13	*	A	24	U	25	A	26	C	27		cWW	cWW		ncSW		cSH	ncSH
7	IL_2AW7_032	2AW7	0.1209	0		A	16S ribosomal RNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW		ncSW		cSH
8	IL_1S72_101	1S72	0.2490	0	Major groove minor groove platform; mini C-loop (H)	9	5S rRNA	C	29	C	30	*	G	50	A	51	A	52	G	53		cWW	cWW		cSW		cSH
9	IL_4A1C_006	4A1C	0.3262	0		3	5S RRNA	C	28	C	29	*	G	48	A	49	A	50	G	51		cWW	cWW		ncSW
10	IL_4IOA_068	4IOA	0.3234	0		X	LSU rRNA	C	1876	C	1877	*	G	1838	A	1839	A	1840	G	1841		ncWW	cWW		ntSH			ncSH
11	IL_4A1B_019	4A1B	0.4086	0		1	26S RRNA	U	469	C	470	*	G	507	A	508	A	509	A	510	ntHS	cWW	ncWW		cSW
12	IL_1U9S_004	1U9S	0.6061	0	Major groove minor groove platform; mini C-loop	A	RIBONUCLEASE P	C	133	G	134	*	C	164	A	165	A	166	G	167	ncBW	cWW	cWW					cSH
13	IL_3Q1Q_005	3Q1Q	0.5652	0		B	RNase P RNA	C	126	G	127	*	C	148	A	149	A	150	G	151		cWW	cWW	ncWW		ncSH		ncSH
14	IL_1U9S_002	1U9S	0.5651	1	Major groove outside cWW, minor groove, intercalation pocket	A	RIBONUCLEASE P	C	228	C	229	*	G	111	A	112	A	114	G	115		cWW	cWW
15	IL_3U5H_091	3U5H	0.5585	0		5	25S rRNA	C	2245	G	2246	*	C	2196	C	2197	A	2198	G	2199		cWW	cWW
16	IL_1U9S_005	1U9S	0.5162	0	Major groove outside cWW, minor groove, intercalation pocket	A	RIBONUCLEASE P	G	161	G	162	*	C	136	A	137	G	138	C	139		cWW	cWW		ntSH
17	IL_3TZR_001	3TZR	0.6186	3	Major groove outside cWW, minor groove, intercalation pocket	B+A	RNA (16-mer)	G	110	C	111	*	G	52	A	53	A	57	C	58		cWW	cWW		ncSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAAG	4
GU*AUAC	3
CG*CAAG	2
AC*GUAU	1
AC*GAAU	1
GU*AAAC	1
UC*GAAA	1
CC*GAAAG	1
CG*CCAG	1
GG*CAGC	1
GC*GAACUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	9
*UA	4
*AAA	1
*CA	1
*AG	1
*AACUA	1

Release history

Release	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13
Date	2013-04-08	2013-05-04	2013-06-01	2013-07-01	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_92027.3	Only in the parent motif
IL_92027.2 Compare	IL_4A1C_006, IL_1S03_007, IL_1U9S_005, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_3TZR_001, IL_1S72_068, IL_1S72_101, IL_3Q1Q_005, IL_3U5H_091, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_1I6U_004	IL_4IOA_068	IL_2ZJR_069

Children motifs

Child motif	Common motif instances	Only in IL_92027.3	Only in the child motif
IL_92027.4 Compare	IL_1S72_101, IL_1S03_007, IL_1U9S_005, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_3TZR_001, IL_1S72_068, IL_4A1C_006, IL_3Q1Q_005, IL_3U5H_091, IL_3U5F_040, IL_2AW7_032, IL_4IOA_068, IL_4A1B_019, IL_1I6U_004		IL_4NVV_109, IL_1VW3_054

Annotations: (9)
Major groove minor groove platform; mini C-loop (H) (3)
Major groove outside cWW, minor groove, intercalation pocket (3)
Major groove minor groove platform; mini C-loop (2)
Basepair signature: cWW-cSW-cWW
Heat map statistics: Min 0.10 | Avg 0.48 | Max 0.91

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Coloring options: Nucleotide numbers

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