Motif IL_92039.2 Version IL_92039.2 of this group appears in releases 3.7 to 3.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_101 | 4IOA | 0.7140 | 1 | Single bulged G | X | LSU rRNA | U | 2853 | C | 2855 | * | G | 2813 | G | 2814 | cWW | cWW |
| 2 | IL_3DIL_005 | 3DIL | 0.5676 | 1 | Single bulged G | A | RNA (174-MER) | U | 109 | C | 111 | * | G | 84 | G | 85 | cWW | cWW |
| 3 | IL_4V9F_010 | 4V9F | 0.5562 | 1 | Single bulged G | 0 | LSU rRNA | U | 374 | C | 376 | * | G | 274 | G | 275 | cWW | cWW |
| 4 | IL_4LFB_016 | 4LFB | 0.4951 | 1 | Single bulged G | A | SSU rRNA | U | 387 | A | 389 | * | U | 375 | G | 376 | cWW | cWW |
| 5 | IL_4LFB_036 | 4LFB | 0.2770 | 1 | Single bulged G | A | SSU rRNA | U | 1390 | U | 1391 | * | G | 925 | G | 927 | cWW | cWW |
| 6 | IL_5J7L_040 | 5J7L | 0.2881 | 1 | Single bulged G | AA | SSU rRNA | U | 1390 | U | 1391 | * | G | 925 | G | 927 | cWW | cWW |
| 7 | IL_2IZN_001 | 2IZN | 0.2312 | 1 | Single bulged G | R | RNA (19-mer) | C | 5||||P_1 | C | 7||||P_1 | * | G | 14||||P_1 | G | 15||||P_1 | cWW | cWW |
| 8 | IL_2IZN_005 | 2IZN | 0.2312 | 1 | Single bulged G | R | RNA (19-mer) | C | 5||||P_P | C | 7||||P_P | * | G | 14||||P_P | G | 15||||P_P | ||
| 9 | IL_3NDB_004 | 3NDB | 0.2084 | 1 | Single bulged G | M | SRP RNA | G | 137 | G | 138 | * | C | 239 | C | 241 | cWW | ncWW |
| 10 | IL_4LFB_001 | 4LFB | 0.0000 | 1 | Single bulged G | A | SSU rRNA | U | 552 | A | 553 | * | U | 30 | A | 32 | cWW | cWW |
| 11 | IL_5J7L_001 | 5J7L | 0.1115 | 1 | Single bulged G | AA | SSU rRNA | U | 552 | A | 553 | * | U | 30 | A | 32 | cWW | cWW |
| 12 | IL_5DE8_001 | 5DE8 | 0.2886 | 1 | Single bulged G | A | sc1 | C | 30 | G | 31 | * | C | 5 | G | 7 | cWW | cWW |
| 13 | IL_5DEA_002 | 5DEA | 0.2739 | 1 | Single bulged G | C | sc1 | C | 30 | G | 31 | * | C | 5 | G | 7 | cWW | cWW |
| 14 | IL_1U9S_006 | 1U9S | 0.5343 | 1 | Major groove intercalation | A | RIBONUCLEASE P | G | 140 | G | 141 | * | U | 158 | C | 160 | cWW | ncWW |
| 15 | IL_5J7L_019 | 5J7L | 0.2753 | 1 | Single bulged G | AA | SSU rRNA | U | 375 | G | 376 | * | U | 387 | A | 389 | cWW | cWW |
| 16 | IL_4C7O_004 | 4C7O | 0.2512 | 1 | Single bulged G | E | SRP RNA | A | 15 | A | 16 | * | U | 27 | U | 29 | cWW | cWW |
| 17 | IL_4P97_002 | 4P97 | 0.2958 | 1 | Single bulged A | A+B | RNA (16-mer) + RNA (11-mer) | C | 12 | C | 13 | * | G | 38 | G | 40 | cWW | cWW |
| 18 | IL_6CMN_001 | 6CMN | 0.3035 | 3 | Multiple bulged bases | D | Trans-Activation Response RNA Element | C | 39 | U | 40 | * | A | 22 | G | 26 | cWW | cWW |
| 19 | IL_5J7L_271 | 5J7L | 0.3360 | 1 | Single bulged G | DA | LSU rRNA | G | 862 | A | 863 | * | U | 913 | C | 915 | cWW | cWW |
| 20 | IL_3IGI_004 | 3IGI | 0.3988 | 1 | Single bulged G | A | Group IIC intron | A | 99 | A | 100 | * | U | 82 | U | 84 | cWW | cWW |
| 21 | IL_5TBW_037 | 5TBW | 0.4272 | 1 | Single bulged G | 1 | LSU rRNA | A | 1099 | U | 1100 | * | A | 983 | U | 985 | cWW | cWW |
| 22 | IL_4V8P_201 | 4V8P | 0.4117 | 1 | Single bulged G (H) | D1 | LSU rRNA | A | 1126 | U | 1127 | * | A | 1009 | U | 1011 | cWW | cWW |
| 23 | IL_4V5O_104 | 4V5O | 0.3194 | 1 | BA | SSU rRNA | U | 439 | C | 440 | * | G | 450 | A | 452 | cWW | cWW | |
| 24 | IL_4V88_442 | 4V88 | 0.3454 | 1 | Single bulged G | A6 | SSU rRNA | U | 1627 | U | 1628 | * | G | 1149 | A | 1151 | cWW | cWW |
| 25 | IL_4V5O_134 | 4V5O | 0.2706 | 1 | Single bulged G (H) | BA | SSU rRNA | U | 1599 | U | 1600 | * | G | 1122 | A | 1124 | cWW | ncWW |
| 26 | IL_4V9F_026 | 4V9F | 0.4867 | 1 | Single bulged G | 0 | LSU rRNA | A | 793 | U | 794 | * | A | 819 | U | 821 | cWW | cWW |
| 27 | IL_4LVW_002 | 4LVW | 0.4914 | 1 | Single bulged G | A | THF riboswitch | G | 67 | U | 69 | * | G | 17 | C | 18 | cWW | cWW |
| 28 | IL_3SUX_001 | 3SUX | 0.4853 | 1 | Single bulged G | X | THF riboswitch | G | 76 | U | 78 | * | G | 20 | C | 21 | cWW | cWW |
| 29 | IL_3SUX_004 | 3SUX | 0.4853 | 1 | Single bulged G | X | THF riboswitch | G | 76||||17_555 | U | 78||||17_555 | * | G | 20||||17_555 | C | 21||||17_555 | cWW | cWW |
| 30 | IL_5TBW_029 | 5TBW | 0.6200 | 1 | Single bulged G | 1 | LSU rRNA | G | 833 | U | 834 | * | G | 859 | C | 861 | cWW | cWW |
| 31 | IL_4Y4O_197 | 4Y4O | 0.5792 | 1 | Single bulged G | 2A | LSU rRNA | G | 702 | U | 703 | * | G | 728 | C | 730 | cWW | cWW |
| 32 | IL_4IOA_016 | 4IOA | 0.4891 | 1 | Single bulged G | X | LSU rRNA | U | 715 | U | 716 | * | G | 741 | A | 743 | cWW | cWW |
| 33 | IL_5J7L_262 | 5J7L | 0.4764 | 1 | Single bulged G | DA | LSU rRNA | U | 702 | U | 703 | * | G | 728 | A | 730 | cWW | cWW |
| 34 | IL_4WF9_023 | 4WF9 | 0.4454 | 1 | Single bulged G | X | LSU rRNA | U | 747 | U | 748 | * | G | 773 | A | 775 | cWW | cWW |
| 35 | IL_5U30_002 | 5U30 | 0.5207 | 1 | Single bulged G | B | sgRNA | C | 3 | U | 4 | * | A | 7 | G | 9 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UU*GGA | 5 |
| UGC*GG | 3 |
| AU*AGU | 3 |
| GGU*GC | 3 |
| UU*GGG | 2 |
| CGC*GG | 2 |
| UA*UGA | 2 |
| CG*CGG | 2 |
| AA*UGU | 2 |
| GU*GGC | 2 |
| UGA*UG | 1 |
| GG*CGC | 1 |
| GG*UGC | 1 |
| UG*UGA | 1 |
| CC*GAG | 1 |
| CU*AUCUG | 1 |
| GA*UGC | 1 |
| UC*GGA | 1 |
| CU*AGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 24 |
| G* | 9 |
| *A | 1 |
| *UCU | 1 |
- Annotations
-
- Single bulged G (29)
- Single bulged G (H) (2)
- Major groove intercalation (1)
- Single bulged A (1)
- (1)
- Multiple bulged bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.49 | Max 1.05
Coloring options: