Motif IL_92109.3 Version IL_92109.3 of this group appears in releases 1.12 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_033 | 3U5F | 0.5845 | 5 | 6 | 18S rRNA | U | 1104 | C | 1105 | * | G | 616 | A | 622 | cWW | cWW | |
| 2 | IL_4BPP_033 | 4BPP | 0.5394 | 5 | A | 18S RRNA | U | 1076 | C | 1077 | * | G | 610 | A | 616 | cWW | cWW | |
| 3 | IL_2QBG_097 | 2QBG | 0.5363 | 2 | B | 23S rRNA | C | 2512 | A | 2513 | * | U | 2571 | G | 2574 | cWW | cWW | |
| 4 | IL_3V2F_095 | 3V2F | 0.3645 | 2 | A | 23S Ribosomal RNA | C | 2512 | G | 2513 | * | C | 2571 | G | 2574 | cWW | cWW | |
| 5 | IL_4IOA_092 | 4IOA | 0.3822 | 2 | Multiple bulged bases | X | LSU rRNA | C | 2491 | G | 2492 | * | C | 2550 | G | 2553 | cWW | cWW |
| 6 | IL_4IOA_099 | 4IOA | 0.1359 | 3 | Multiple bulged bases (H) | X | LSU rRNA | C | 2674 | U | 2675 | * | A | 2690 | G | 2694 | cWW | cWW |
| 7 | IL_1S72_086 | 1S72 | 0.0000 | 2 | 0 | LSU rRNA | C | 2547 | C | 2548 | * | G | 2606 | G | 2609 | cWW | cWW | |
| 8 | IL_3U5H_115 | 3U5H | 0.1014 | 2 | 5 | 25S rRNA | C | 2881 | U | 2882 | * | A | 2940 | G | 2943 | cWW | cWW | |
| 9 | IL_4A1B_113 | 4A1B | 0.1350 | 2 | 1 | 26S RRNA | C | 2869 | U | 2870 | * | A | 2928 | G | 2931 | cWW | cWW | |
| 10 | IL_3U5H_031 | 3U5H | 0.5003 | 1 | 5 | 25S rRNA | G | 833 | U | 834 | * | G | 859 | C | 861 | cWW | cWW | |
| 11 | IL_3V2F_008 | 3V2F | 0.5267 | 1 | A | 23S Ribosomal RNA | G | 271|||I | C | 271|||J | * | G | 271|||M | C | 271|||O | cWW | cWW | |
| 12 | IL_2QBG_022 | 2QBG | 0.4818 | 1 | B | 23S rRNA | G | 697 | C | 698 | * | G | 763 | C | 765 | cWW | cWW | |
| 13 | IL_3SNP_002 | 3SNP | 0.5107 | 1 | C | ferritin H IRE RNA | A | 13 | C | 14 | * | G | 18 | U | 20 | cWW | cWW | |
| 14 | IL_3SN2_002 | 3SN2 | 0.5124 | 1 | Single bulged C | B | transferrin receptor iron regulatory element B RNA | G | 13 | C | 14 | * | G | 18 | C | 20 | cWW | cWW |
| 15 | IL_4OO8_002 | 4OO8 | 0.5537 | 1 | B | RNA (97-MER) | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UC*GUUAAAA | 2 |
| CG*CACG | 2 |
| CU*AACG | 2 |
| GC*GUC | 2 |
| CA*UACG | 1 |
| CU*ACAUG | 1 |
| CC*GUCG | 1 |
| GU*GGC | 1 |
| GC*GAC | 1 |
| AC*GUU | 1 |
| GC*GCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AC | 5 |
| *U | 3 |
| *UUAAA | 2 |
| *CAU | 1 |
| *UC | 1 |
| *G | 1 |
| *A | 1 |
| *C | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_92109.3 | Only in the parent motif |
|---|---|---|---|
| IL_92109.2 Compare | IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092 | IL_4OO8_002, IL_4IOA_099 | IL_2AW7_029, IL_4IOA_024 |
| IL_30354.1 Compare | IL_4IOA_099 | IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_4OO8_002, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092 |
Children motifs
| Child motif | Common motif instances | Only in IL_92109.3 | Only in the child motif |
|---|---|---|---|
| IL_37056.1 Compare | IL_2QBG_022, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_4OO8_002, IL_3SN2_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092 | IL_3V2F_008, IL_4IOA_099, IL_3V2F_095 | IL_4NVV_094, IL_1S72_045, IL_4IOA_024, IL_1VW3_080 |
| IL_95908.1 Compare | IL_4IOA_099 | IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_4OO8_002, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092 | IL_4NVV_102, IL_3U5F_086 |
- Annotations
-
- (12)
- Single bulged C (1)
- Multiple bulged bases (1)
- Multiple bulged bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.48 | Max 0.98
Coloring options: