RNA 3D Hub //

Motif IL_92109.3 Version IL_92109.3 of this group appears in releases 1.12 to 1.13

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_3U5F_0333U5F0.58455618S rRNAU1104C1105*G616A622cWWcWW
2 IL_4BPP_0334BPP0.53945A18S RRNAU1076C1077*G610A616cWWcWW
3 IL_2QBG_0972QBG0.53632B23S rRNAC2512A2513*U2571G2574cWWcWW
4 IL_3V2F_0953V2F0.36452A23S Ribosomal RNAC2512G2513*C2571G2574cWWcWW
5 IL_4IOA_0924IOA0.38222Multiple bulged basesX LSU rRNAC2491G2492*C2550G2553cWWcWW
6 IL_4IOA_0994IOA0.13593Multiple bulged bases (H)X LSU rRNAC2674U2675*A2690G2694cWWcWW
7 IL_1S72_0861S720.000020 LSU rRNAC2547C2548*G2606G2609cWWcWW
8 IL_3U5H_1153U5H0.10142525S rRNAC2881U2882*A2940G2943cWWcWW
9 IL_4A1B_1134A1B0.13502126S RRNAC2869U2870*A2928G2931cWWcWW
10 IL_3U5H_0313U5H0.50031525S rRNAG833U834*G859C861cWWcWW
11 IL_3V2F_0083V2F0.52671A23S Ribosomal RNAG271|||IC271|||J*G271|||MC271|||OcWWcWW
12 IL_2QBG_0222QBG0.48181B23S rRNAG697C698*G763C765cWWcWW
13 IL_3SNP_0023SNP0.51071Cferritin H IRE RNAA13C14*G18U20cWWcWW
14 IL_3SN2_0023SN20.51241Single bulged CBtransferrin receptor iron regulatory element B RNAG13C14*G18C20cWWcWW
15 IL_4OO8_0024OO80.55371BRNA (97-MER)G54C55*G58C60cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UC*GUUAAAA2
CG*CACG2
CU*AACG2
GC*GUC2
CA*UACG1
CU*ACAUG1
CC*GUCG1
GU*GGC1
GC*GAC1
AC*GUU1
GC*GCC1
Non-Watson-Crick part of the motif
SequenceCounts
*AC5
*U3
*UUAAA2
*CAU1
*UC1
*G1
*A1
*C1
Annotations
  • (12)
  • Single bulged C (1)
  • Multiple bulged bases (1)
  • Multiple bulged bases (H) (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.48 | Max 0.98
    Help

    Coloring options:

    IL_3U5F_033:IL_3U5F_033 = 0IL_3U5F_033:IL_4BPP_033 = 0.1222IL_3U5F_033:IL_2QBG_097 = 0.6171IL_3U5F_033:IL_3V2F_095 = 0.5868IL_3U5F_033:IL_4IOA_092 = 0.5901IL_3U5F_033:IL_4IOA_099 = 0.6124IL_3U5F_033:IL_1S72_086 = 0.5845IL_3U5F_033:IL_3U5H_115 = 0.6236IL_3U5F_033:IL_4A1B_113 = 0.6626IL_3U5F_033:IL_3U5H_031 = 0.5733IL_3U5F_033:IL_3V2F_008 = 0.6786IL_3U5F_033:IL_2QBG_022 = 0.6729IL_3U5F_033:IL_3SNP_002 = 0.6951IL_3U5F_033:IL_3SN2_002 = 0.7478IL_3U5F_033:IL_4OO8_002 = 0.7716IL_4BPP_033:IL_3U5F_033 = 0.1222IL_4BPP_033:IL_4BPP_033 = 0IL_4BPP_033:IL_2QBG_097 = 0.5389IL_4BPP_033:IL_3V2F_095 = 0.5093IL_4BPP_033:IL_4IOA_092 = 0.5077IL_4BPP_033:IL_4IOA_099 = 0.5656IL_4BPP_033:IL_1S72_086 = 0.5394IL_4BPP_033:IL_3U5H_115 = 0.5851IL_4BPP_033:IL_4A1B_113 = 0.6263IL_4BPP_033:IL_3U5H_031 = 0.6076IL_4BPP_033:IL_3V2F_008 = 0.7141IL_4BPP_033:IL_2QBG_022 = 0.6974IL_4BPP_033:IL_3SNP_002 = 0.7224IL_4BPP_033:IL_3SN2_002 = 0.7708IL_4BPP_033:IL_4OO8_002 = 0.7979IL_2QBG_097:IL_3U5F_033 = 0.6171IL_2QBG_097:IL_4BPP_033 = 0.5389IL_2QBG_097:IL_2QBG_097 = 0IL_2QBG_097:IL_3V2F_095 = 0.2258IL_2QBG_097:IL_4IOA_092 = 0.2512IL_2QBG_097:IL_4IOA_099 = 0.5326IL_2QBG_097:IL_1S72_086 = 0.5363IL_2QBG_097:IL_3U5H_115 = 0.5957IL_2QBG_097:IL_4A1B_113 = 0.6166IL_2QBG_097:IL_3U5H_031 = 0.7954IL_2QBG_097:IL_3V2F_008 = 0.9463IL_2QBG_097:IL_2QBG_022 = 0.9163IL_2QBG_097:IL_3SNP_002 = 0.9388IL_2QBG_097:IL_3SN2_002 = 0.9637IL_2QBG_097:IL_4OO8_002 = 0.9836IL_3V2F_095:IL_3U5F_033 = 0.5868IL_3V2F_095:IL_4BPP_033 = 0.5093IL_3V2F_095:IL_2QBG_097 = 0.2258IL_3V2F_095:IL_3V2F_095 = 0IL_3V2F_095:IL_4IOA_092 = 0.1197IL_3V2F_095:IL_4IOA_099 = 0.337IL_3V2F_095:IL_1S72_086 = 0.3645IL_3V2F_095:IL_3U5H_115 = 0.4172IL_3V2F_095:IL_4A1B_113 = 0.4421IL_3V2F_095:IL_3U5H_031 = 0.7147IL_3V2F_095:IL_3V2F_008 = 0.8193IL_3V2F_095:IL_2QBG_022 = 0.7786IL_3V2F_095:IL_3SNP_002 = 0.8042IL_3V2F_095:IL_3SN2_002 = 0.8222IL_3V2F_095:IL_4OO8_002 = 0.8539IL_4IOA_092:IL_3U5F_033 = 0.5901IL_4IOA_092:IL_4BPP_033 = 0.5077IL_4IOA_092:IL_2QBG_097 = 0.2512IL_4IOA_092:IL_3V2F_095 = 0.1197IL_4IOA_092:IL_4IOA_092 = 0IL_4IOA_092:IL_4IOA_099 = 0.35IL_4IOA_092:IL_1S72_086 = 0.3822IL_4IOA_092:IL_3U5H_115 = 0.4285IL_4IOA_092:IL_4A1B_113 = 0.4553IL_4IOA_092:IL_3U5H_031 = 0.7552IL_4IOA_092:IL_3V2F_008 = 0.8413IL_4IOA_092:IL_2QBG_022 = 0.8006IL_4IOA_092:IL_3SNP_002 = 0.8277IL_4IOA_092:IL_3SN2_002 = 0.8388IL_4IOA_092:IL_4OO8_002 = 0.8786IL_4IOA_099:IL_3U5F_033 = 0.6124IL_4IOA_099:IL_4BPP_033 = 0.5656IL_4IOA_099:IL_2QBG_097 = 0.5326IL_4IOA_099:IL_3V2F_095 = 0.337IL_4IOA_099:IL_4IOA_092 = 0.35IL_4IOA_099:IL_4IOA_099 = 0IL_4IOA_099:IL_1S72_086 = 0.1359IL_4IOA_099:IL_3U5H_115 = 0.1358IL_4IOA_099:IL_4A1B_113 = 0.1669IL_4IOA_099:IL_3U5H_031 = 0.5744IL_4IOA_099:IL_3V2F_008 = 0.5964IL_4IOA_099:IL_2QBG_022 = 0.5469IL_4IOA_099:IL_3SNP_002 = 0.5815IL_4IOA_099:IL_3SN2_002 = 0.5765IL_4IOA_099:IL_4OO8_002 = 0.6278IL_1S72_086:IL_3U5F_033 = 0.5845IL_1S72_086:IL_4BPP_033 = 0.5394IL_1S72_086:IL_2QBG_097 = 0.5363IL_1S72_086:IL_3V2F_095 = 0.3645IL_1S72_086:IL_4IOA_092 = 0.3822IL_1S72_086:IL_4IOA_099 = 0.1359IL_1S72_086:IL_1S72_086 = 0IL_1S72_086:IL_3U5H_115 = 0.1014IL_1S72_086:IL_4A1B_113 = 0.135IL_1S72_086:IL_3U5H_031 = 0.5003IL_1S72_086:IL_3V2F_008 = 0.5267IL_1S72_086:IL_2QBG_022 = 0.4818IL_1S72_086:IL_3SNP_002 = 0.5107IL_1S72_086:IL_3SN2_002 = 0.5124IL_1S72_086:IL_4OO8_002 = 0.5537IL_3U5H_115:IL_3U5F_033 = 0.6236IL_3U5H_115:IL_4BPP_033 = 0.5851IL_3U5H_115:IL_2QBG_097 = 0.5957IL_3U5H_115:IL_3V2F_095 = 0.4172IL_3U5H_115:IL_4IOA_092 = 0.4285IL_3U5H_115:IL_4IOA_099 = 0.1358IL_3U5H_115:IL_1S72_086 = 0.1014IL_3U5H_115:IL_3U5H_115 = 0IL_3U5H_115:IL_4A1B_113 = 0.0835IL_3U5H_115:IL_3U5H_031 = 0.5039IL_3U5H_115:IL_3V2F_008 = 0.5042IL_3U5H_115:IL_2QBG_022 = 0.4563IL_3U5H_115:IL_3SNP_002 = 0.4879IL_3U5H_115:IL_3SN2_002 = 0.4773IL_3U5H_115:IL_4OO8_002 = 0.5266IL_4A1B_113:IL_3U5F_033 = 0.6626IL_4A1B_113:IL_4BPP_033 = 0.6263IL_4A1B_113:IL_2QBG_097 = 0.6166IL_4A1B_113:IL_3V2F_095 = 0.4421IL_4A1B_113:IL_4IOA_092 = 0.4553IL_4A1B_113:IL_4IOA_099 = 0.1669IL_4A1B_113:IL_1S72_086 = 0.135IL_4A1B_113:IL_3U5H_115 = 0.0835IL_4A1B_113:IL_4A1B_113 = 0IL_4A1B_113:IL_3U5H_031 = 0.521IL_4A1B_113:IL_3V2F_008 = 0.5232IL_4A1B_113:IL_2QBG_022 = 0.4713IL_4A1B_113:IL_3SNP_002 = 0.5042IL_4A1B_113:IL_3SN2_002 = 0.4888IL_4A1B_113:IL_4OO8_002 = 0.5335IL_3U5H_031:IL_3U5F_033 = 0.5733IL_3U5H_031:IL_4BPP_033 = 0.6076IL_3U5H_031:IL_2QBG_097 = 0.7954IL_3U5H_031:IL_3V2F_095 = 0.7147IL_3U5H_031:IL_4IOA_092 = 0.7552IL_3U5H_031:IL_4IOA_099 = 0.5744IL_3U5H_031:IL_1S72_086 = 0.5003IL_3U5H_031:IL_3U5H_115 = 0.5039IL_3U5H_031:IL_4A1B_113 = 0.521IL_3U5H_031:IL_3U5H_031 = 0IL_3U5H_031:IL_3V2F_008 = 0.2773IL_3U5H_031:IL_2QBG_022 = 0.2949IL_3U5H_031:IL_3SNP_002 = 0.3044IL_3U5H_031:IL_3SN2_002 = 0.3573IL_3U5H_031:IL_4OO8_002 = 0.3369IL_3V2F_008:IL_3U5F_033 = 0.6786IL_3V2F_008:IL_4BPP_033 = 0.7141IL_3V2F_008:IL_2QBG_097 = 0.9463IL_3V2F_008:IL_3V2F_095 = 0.8193IL_3V2F_008:IL_4IOA_092 = 0.8413IL_3V2F_008:IL_4IOA_099 = 0.5964IL_3V2F_008:IL_1S72_086 = 0.5267IL_3V2F_008:IL_3U5H_115 = 0.5042IL_3V2F_008:IL_4A1B_113 = 0.5232IL_3V2F_008:IL_3U5H_031 = 0.2773IL_3V2F_008:IL_3V2F_008 = 0IL_3V2F_008:IL_2QBG_022 = 0.1231IL_3V2F_008:IL_3SNP_002 = 0.0975IL_3V2F_008:IL_3SN2_002 = 0.1328IL_3V2F_008:IL_4OO8_002 = 0.1582IL_2QBG_022:IL_3U5F_033 = 0.6729IL_2QBG_022:IL_4BPP_033 = 0.6974IL_2QBG_022:IL_2QBG_097 = 0.9163IL_2QBG_022:IL_3V2F_095 = 0.7786IL_2QBG_022:IL_4IOA_092 = 0.8006IL_2QBG_022:IL_4IOA_099 = 0.5469IL_2QBG_022:IL_1S72_086 = 0.4818IL_2QBG_022:IL_3U5H_115 = 0.4563IL_2QBG_022:IL_4A1B_113 = 0.4713IL_2QBG_022:IL_3U5H_031 = 0.2949IL_2QBG_022:IL_3V2F_008 = 0.1231IL_2QBG_022:IL_2QBG_022 = 0IL_2QBG_022:IL_3SNP_002 = 0.0828IL_2QBG_022:IL_3SN2_002 = 0.1088IL_2QBG_022:IL_4OO8_002 = 0.1406IL_3SNP_002:IL_3U5F_033 = 0.6951IL_3SNP_002:IL_4BPP_033 = 0.7224IL_3SNP_002:IL_2QBG_097 = 0.9388IL_3SNP_002:IL_3V2F_095 = 0.8042IL_3SNP_002:IL_4IOA_092 = 0.8277IL_3SNP_002:IL_4IOA_099 = 0.5815IL_3SNP_002:IL_1S72_086 = 0.5107IL_3SNP_002:IL_3U5H_115 = 0.4879IL_3SNP_002:IL_4A1B_113 = 0.5042IL_3SNP_002:IL_3U5H_031 = 0.3044IL_3SNP_002:IL_3V2F_008 = 0.0975IL_3SNP_002:IL_2QBG_022 = 0.0828IL_3SNP_002:IL_3SNP_002 = 0IL_3SNP_002:IL_3SN2_002 = 0.0999IL_3SNP_002:IL_4OO8_002 = 0.1142IL_3SN2_002:IL_3U5F_033 = 0.7478IL_3SN2_002:IL_4BPP_033 = 0.7708IL_3SN2_002:IL_2QBG_097 = 0.9637IL_3SN2_002:IL_3V2F_095 = 0.8222IL_3SN2_002:IL_4IOA_092 = 0.8388IL_3SN2_002:IL_4IOA_099 = 0.5765IL_3SN2_002:IL_1S72_086 = 0.5124IL_3SN2_002:IL_3U5H_115 = 0.4773IL_3SN2_002:IL_4A1B_113 = 0.4888IL_3SN2_002:IL_3U5H_031 = 0.3573IL_3SN2_002:IL_3V2F_008 = 0.1328IL_3SN2_002:IL_2QBG_022 = 0.1088IL_3SN2_002:IL_3SNP_002 = 0.0999IL_3SN2_002:IL_3SN2_002 = 0IL_3SN2_002:IL_4OO8_002 = 0.12IL_4OO8_002:IL_3U5F_033 = 0.7716IL_4OO8_002:IL_4BPP_033 = 0.7979IL_4OO8_002:IL_2QBG_097 = 0.9836IL_4OO8_002:IL_3V2F_095 = 0.8539IL_4OO8_002:IL_4IOA_092 = 0.8786IL_4OO8_002:IL_4IOA_099 = 0.6278IL_4OO8_002:IL_1S72_086 = 0.5537IL_4OO8_002:IL_3U5H_115 = 0.5266IL_4OO8_002:IL_4A1B_113 = 0.5335IL_4OO8_002:IL_3U5H_031 = 0.3369IL_4OO8_002:IL_3V2F_008 = 0.1582IL_4OO8_002:IL_2QBG_022 = 0.1406IL_4OO8_002:IL_3SNP_002 = 0.1142IL_4OO8_002:IL_3SN2_002 = 0.12IL_4OO8_002:IL_4OO8_002 = 0IL_3U5F_033IL_4BPP_033IL_2QBG_097IL_3V2F_095IL_4IOA_092IL_4IOA_099IL_1S72_086IL_3U5H_115IL_4A1B_113IL_3U5H_031IL_3V2F_008IL_2QBG_022IL_3SNP_002IL_3SN2_002IL_4OO8_002Discrepancy0.000.200.400.600.80
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