#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_4BPP_0334BPP0.53945A18S RRNAU1076C1077*G610A616cWWcWW
2 IL_3U5F_0333U5F0.58455618S rRNAU1104C1105*G616A622cWWcWW
3 IL_4IOA_0244IOA0.74151Single bulged C (H)X LSU rRNAC863C864*G938G940cWWcWW
4 IL_1S72_0451S720.63532Bulged stacked bases (H)0 LSU rRNAG1269U1270*A1286C1289cWWcWW
5 IL_3U5H_0313U5H0.50031525S rRNAG833U834*G859C861cWWcWW
6 IL_2QBG_0222QBG0.48181B23S rRNAG697C698*G763C765cWWcWW
7 IL_3SNP_0023SNP0.51071Cferritin H IRE RNAA13C14*G18U20cWWcWW
8 IL_3SN2_0023SN20.51241Single bulged CBtransferrin receptor iron regulatory element B RNAG13C14*G18C20cWWcWW
9 IL_4OO8_0024OO80.55371BRNA (97-MER)G54C55*G58C60cWWcWW
10 IL_4A1B_1134A1B0.13502126S RRNAC2869U2870*A2928G2931cWWcWW
11 IL_3U5H_1153U5H0.10142525S rRNAC2881U2882*A2940G2943cWWcWW
12 IL_1S72_0861S720.000020 LSU rRNAC2547C2548*G2606G2609cWWcWW
13 IL_4IOA_0924IOA0.38222Multiple bulged basesX LSU rRNAC2491G2492*C2550G2553cWWcWW
14 IL_4NVV_0944NVV0.39792A23S Ribosomal RNAC2524G2525*C2583G2586cWWcWW
15 IL_2QBG_0972QBG0.53632B23S rRNAC2512A2513*U2571G2574cWWcWW
16 IL_1VW3_0801VW30.50852A21S ribosomal RNAC2778A2779*U2838G2841cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UC*GUUAAAA2
CU*AACG2
CG*CACG2
CA*UACG2
CC*GCG1
GU*AAUC1
GU*GGC1
GC*GAC1
AC*GUU1
GC*GCC1
GC*GUC1
CC*GUCG1
Non-Watson-Crick part of the motif
SequenceCounts
*AC6
*UUAAA2
*C2
*U2
*AU1
*G1
*A1
*UC1

Release history

Release1.14
Date2014-04-27
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_37056.1Only in the parent motif
IL_92109.3
Compare
IL_2QBG_022, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_4OO8_002, IL_3SN2_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092IL_4NVV_094, IL_1S72_045, IL_4IOA_024, IL_1VW3_080IL_3V2F_008, IL_4IOA_099, IL_3V2F_095
IL_25300.3
Compare
IL_4IOA_024IL_1S72_045, IL_2QBG_097, IL_2QBG_022, IL_4A1B_113, IL_4BPP_033, IL_4NVV_094, IL_3U5F_033, IL_4OO8_002, IL_3SN2_002, IL_3U5H_031, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_1VW3_080, IL_4IOA_092IL_2QBG_032, IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_3U5H_046
IL_97217.11
Compare
IL_1S72_045IL_3U5H_031, IL_2QBG_097, IL_2QBG_022, IL_4A1B_113, IL_4BPP_033, IL_4NVV_094, IL_3U5F_033, IL_4OO8_002, IL_3SN2_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_1VW3_080, IL_4IOA_092, IL_4IOA_024IL_4IOA_002, IL_4FAW_004, IL_4L8H_001, IL_4BPP_022, IL_3SN2_001, IL_4BPP_024, IL_4ANG_001, IL_2AW7_051, IL_4IOA_075, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3DIR_001, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_3U5H_065, IL_3V2F_002, IL_3D2V_001, IL_2BQ5_001, IL_1U9S_001, IL_1S72_040, IL_4A1B_044, IL_3Q1Q_004, IL_2AW7_026, IL_3TZR_002, IL_4BPP_021, IL_4A1B_124, IL_2PN4_003, IL_1CSL_002, IL_2QBG_099, IL_4BPP_016, IL_2QBG_069, IL_4BPP_013, IL_4BPP_025, IL_3V2F_056, IL_1GID_009, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_3U5H_077, IL_4A1B_131, IL_1S72_030, IL_1S72_096, IL_3V2F_045, IL_3B31_001, IL_2XXA_010, IL_3U5H_025, IL_2XXA_012, IL_1S72_002, IL_4IOA_071, IL_2NOK_006, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_4IOA_057, IL_3U5H_026, IL_4BPP_075, IL_2QBG_089, IL_3SNP_001, IL_3V2F_104, IL_4IOA_031, IL_1FJG_040, IL_2QBG_007, IL_4A1B_076, IL_3U5H_003, IL_3U5H_002, IL_1S72_067, IL_4A1B_072, IL_1S72_088, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_3U5F_026, IL_1U9S_003, IL_3U5F_024, IL_3GX5_001, IL_3IWN_004, IL_3IWN_003, IL_4BPP_031, IL_3U5H_089, IL_2OIU_003, IL_2OIU_001, IL_2AW7_042, IL_4BPP_072, IL_4LGT_002, IL_3V2F_077, IL_3V2F_073, IL_2AW7_008, IL_2C4Z_001, IL_3U5H_014, IL_1S72_077, IL_1S72_074, IL_2AW7_001, IL_1S72_070, IL_2AW7_002, IL_3U5H_119, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_2QBG_023, IL_2QBG_076, IL_3U5H_094, IL_1JZV_002, IL_3OWZ_001, IL_3U5H_092, IL_3U5H_093, IL_3SUX_001, IL_1R3E_001, IL_3U5H_098, IL_4IOA_101, IL_4BPP_064, IL_4BPP_067, IL_4A1C_003, IL_4A1C_002, IL_2BU1_001, IL_3R2D_001, IL_1DUQ_002, IL_1MJI_001, IL_2AW7_017, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_3U5H_143, IL_3U5H_140, IL_2AW7_019, IL_4IOA_034, IL_3UCZ_002, IL_2QBG_107, IL_3W3S_001, IL_3W3S_002, IL_2QBG_104, IL_3U5F_009, IL_1FJG_001, IL_3D0U_005, IL_3DHS_003, IL_3U5F_001, IL_3D0U_001, IL_2IZN_001, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_4BPP_009, IL_1MFQ_005, IL_1U63_002, IL_4C7O_004, IL_4C7O_001, IL_2QBG_035, IL_1FJG_016, IL_3U5H_034, IL_1FJG_014, IL_3U5H_030, IL_2PJP_001, IL_4A1B_123, IL_3U5H_136, IL_4A1B_121, IL_3V2F_066, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_1S72_014, IL_4B5R_001, IL_1R3E_002, IL_1FJG_007, IL_3IVK_003, IL_4A1B_095, IL_2IZ9_001, IL_4A1B_091, IL_2ZY6_002, IL_4A1B_039, IL_4LVZ_002, IL_2QBG_070, IL_1ET4_004, IL_4A1B_031, IL_4A1B_036, IL_4IOA_011, IL_4IOA_016, IL_3U5H_129, IL_1FJG_002, IL_4IOA_015, IL_397D_001, IL_3U5H_125, IL_3V2F_020, IL_3OWZ_005, IL_1FJG_043, IL_4FRG_002, IL_3MEI_001, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_1S72_064, IL_3P49_003, IL_4A1B_088, IL_1GID_012, IL_1X8W_001, IL_4A1B_084, IL_4BPP_053, IL_4BPP_055, IL_4BPP_054, IL_3U5F_058, IL_2AW7_048, IL_1DQH_001, IL_3U5F_066, IL_2AW7_043, IL_4BPP_030, IL_1FJG_035, IL_4A1B_023, IL_1FJG_036, IL_3WBM_001, IL_3V2F_033, IL_4IOA_064, IL_4A1B_105, IL_2QUX_002, IL_3V2F_035, IL_3UCZ_003, IL_2VPL_002, IL_3V2F_038, IL_1GID_002, IL_4A1B_101, IL_4A1B_100, IL_3U5H_050, IL_1FUF_002, IL_1FUF_003, IL_3U5H_055, IL_3V2F_019, IL_3U5H_058, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_4AOB_001, IL_3DHS_002, IL_1NBS_005, IL_1JZV_005

Children motifs

Child motifCommon motif instancesOnly in IL_37056.1Only in the child motif
IL_03128.1
Compare
IL_2QBG_022, IL_2QBG_097, IL_3SN2_002, IL_4NVV_094, IL_1VW3_080, IL_4OO8_002, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092IL_1S72_045, IL_4BPP_033, IL_3U5F_033, IL_4A1B_113, IL_3U5H_115, IL_1S72_086, IL_4IOA_024IL_4CUV_055, IL_4CUX_030, IL_4IOA_033, IL_3U5H_054, IL_2AW7_027
IL_04465.1
Compare
IL_4BPP_033, IL_1S72_045, IL_3U5F_033, IL_4IOA_024IL_2QBG_097, IL_2QBG_022, IL_3SN2_002, IL_4NVV_094, IL_3U5H_031, IL_4OO8_002, IL_4A1B_113, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_1VW3_080, IL_4IOA_092IL_2QBG_086, IL_4CUV_143, IL_1FJG_022, IL_4CUV_067, IL_1FJG_005, IL_4FAW_014, IL_2AW7_005, IL_2QBG_107, IL_1S72_042, IL_3U5H_063, IL_2QBG_060, IL_3D0U_005, IL_4NVV_061, IL_1S72_022, IL_4NVV_107, IL_2NZ4_007, IL_4C7O_003, IL_4A1B_063, IL_2AW7_029, IL_4IOA_101, IL_3U5H_137, IL_1S72_099, IL_4CUV_108, IL_4CUX_033, IL_1U9S_006, IL_4NVV_034, IL_3U5H_019
IL_97217.13
Compare
IL_4A1B_113, IL_3U5H_115, IL_1S72_086IL_1S72_045, IL_2QBG_097, IL_2QBG_022, IL_4BPP_033, IL_4NVV_094, IL_3U5F_033, IL_4OO8_002, IL_3SN2_002, IL_3U5H_031, IL_3SNP_002, IL_1VW3_080, IL_4IOA_092, IL_4IOA_024IL_4CUX_001, IL_4CUV_149, IL_4A1B_123, IL_4FAW_004, IL_4CUV_023, IL_4L8H_001, IL_4BPP_022, IL_3SN2_001, IL_4BPP_024, IL_4CUV_029, IL_2AW7_051, IL_4IOA_075, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3DIR_001, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_3U5H_065, IL_1VW3_064, IL_1VW3_067, IL_3D2V_001, IL_1VW3_060, IL_1S72_040, IL_4NVV_002, IL_4A1B_044, IL_4CUX_066, IL_3GX5_001, IL_3U5H_077, IL_4IOA_002, IL_3TZR_002, IL_4CUV_142, IL_4CUV_136, IL_4CUV_134, IL_4A1B_124, IL_4CUV_130, IL_4CUV_158, IL_4NVV_069, IL_2PN4_003, IL_1CSL_002, IL_4CUV_150, IL_4BPP_016, IL_3U5F_024, IL_4BPP_013, IL_4BPP_025, IL_1GID_009, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_2AW7_026, IL_1S72_030, IL_4CUX_017, IL_4NVV_076, IL_3B31_001, IL_3U5H_089, IL_2XXA_010, IL_3U5H_025, IL_2XXA_012, IL_1VW3_088, IL_4IOA_071, IL_2NOK_006, IL_4CUV_037, IL_4CUV_101, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_4IOA_057, IL_3U5H_026, IL_4BPP_075, IL_2QBG_089, IL_3SNP_001, IL_3U5H_143, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_3U5H_003, IL_3U5H_002, IL_1GID_012, IL_4A1B_072, IL_4CUV_093, IL_1S72_088, IL_4CUV_094, IL_1S72_104, IL_6MSF_001, IL_3U5F_026, IL_1U9S_001, IL_1VW3_087, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_1VW3_082, IL_4NVV_104, IL_2AW7_043, IL_4CUV_017, IL_4CUV_016, IL_2OIU_003, IL_2OIU_001, IL_4BPP_030, IL_4BPP_072, IL_4LGT_002, IL_4CUV_076, IL_4CUX_025, IL_1VW3_018, IL_1VW3_019, IL_2C4Z_001, IL_3U5H_014, IL_1S72_077, IL_1S72_074, IL_1FJG_036, IL_2AW7_001, IL_4BPP_021, IL_1S72_070, IL_2AW7_002, IL_4CUX_031, IL_3U5H_119, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_4O26_001, IL_2QBG_023, IL_2QBG_076, IL_4CUV_089, IL_3OWZ_005, IL_1VW3_052, IL_1JZV_002, IL_3OWZ_001, IL_1VW3_091, IL_3U5H_092, IL_4CUX_063, IL_3SUX_001, IL_1R3E_001, IL_3U5H_098, IL_4CUV_003, IL_2AW7_008, IL_4BPP_064, IL_4A1B_039, IL_4BPP_067, IL_3U5H_030, IL_4A1C_003, IL_4A1C_002, IL_1VW3_069, IL_2BU1_001, IL_4CUV_146, IL_4CUV_065, IL_3UCZ_003, IL_1DUQ_002, IL_1MJI_001, IL_2AW7_017, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_1VW3_028, IL_3U5H_140, IL_2AW7_019, IL_4IOA_034, IL_3UCZ_002, IL_3W3S_001, IL_3W3S_002, IL_2QBG_104, IL_3U5F_009, IL_4NVV_040, IL_1FJG_001, IL_1S72_002, IL_3DHS_003, IL_3U5F_001, IL_3D0U_001, IL_3U5H_093, IL_2IZN_001, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_4BPP_009, IL_4CUV_059, IL_1U63_002, IL_4C7O_004, IL_4CUV_056, IL_4C7O_001, IL_1FUF_002, IL_1FJG_016, IL_3U5H_034, IL_1FJG_014, IL_1S72_096, IL_2PJP_001, IL_2BQ5_001, IL_3U5H_136, IL_4A1B_121, IL_3U5H_055, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_4BPP_055, IL_1S72_014, IL_1GID_002, IL_1R3E_002, IL_4CUX_053, IL_4CUV_097, IL_4IOA_011, IL_4NVV_037, IL_3IVK_003, IL_4NVV_058, IL_4ANG_001, IL_4A1B_095, IL_2IZ9_001, IL_4A1B_091, IL_2ZY6_002, IL_4CUV_042, IL_1U9S_003, IL_4LVZ_002, IL_2QBG_070, IL_1ET4_004, IL_4B5R_001, IL_4A1B_031, IL_4NVV_097, IL_4A1B_036, IL_1FJG_007, IL_4IOA_016, IL_3U5H_129, IL_1FJG_002, IL_4IOA_015, IL_397D_001, IL_4A1B_131, IL_4NVV_047, IL_3U5H_094, IL_1VW3_041, IL_1VW3_004, IL_4FRG_002, IL_3MEI_001, IL_3U5H_125, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_1S72_064, IL_1MFQ_005, IL_4NVV_021, IL_4NVV_022, IL_3P49_003, IL_4A1B_088, IL_1S72_067, IL_1X8W_001, IL_4A1B_084, IL_4BPP_053, IL_4IOA_031, IL_4BPP_054, IL_3U5F_058, IL_2AW7_048, IL_4NVV_080, IL_4CUV_034, IL_1DQH_001, IL_2QBG_069, IL_3U5F_066, IL_2QBG_099, IL_4CUV_051, IL_4BPP_031, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_4CUV_119, IL_3WBM_001, IL_4IOA_064, IL_4A1B_105, IL_4CUV_123, IL_2QUX_002, IL_3R2D_001, IL_2VPL_002, IL_4A1B_101, IL_4A1B_100, IL_4A1B_076, IL_2PLY_002, IL_3U5H_050, IL_2QBG_035, IL_1FUF_003, IL_1VW3_055, IL_3U5H_058, IL_4CUV_002, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_4AOB_001, IL_3DHS_002, IL_1NBS_005, IL_1JZV_005
Annotations
  • (12)
  • Bulged stacked bases (H) (1)
  • Single bulged C (1)
  • Single bulged C (H) (1)
  • Multiple bulged bases (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.53 | Max 0.99
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