Motif IL_95908.1 Version IL_95908.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_086 | 3U5F | 0.5829 | 1 | 6 | U | 1656 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW | |
| 2 | IL_4IOA_099 | 4IOA | 0.0000 | 3 | Multiple bulged bases (H) | X | A | 2690 | G | 2694 | * | C | 2674 | U | 2675 | cWW | cWW |
| 3 | IL_4NVV_102 | 4NVV | 0.0823 | 3 | A | A | 2723 | G | 2727 | * | C | 2707 | U | 2708 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUG*UA | 1 |
| ACAUG*CU | 1 |
| AUAAG*CU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U* | 1 |
| CAU* | 1 |
| UAA* | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_95908.1 | Only in the parent motif |
|---|---|---|---|
| IL_92109.3 Compare | IL_4IOA_099 | IL_4NVV_102, IL_3U5F_086 | IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_4OO8_002, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092 |
| IL_47875.1 Compare | IL_3U5F_086 | IL_4NVV_102, IL_4IOA_099 | IL_2AW7_029, IL_1FJG_022 |
Children motifs
| Child motif | Common motif instances | Only in IL_95908.1 | Only in the child motif |
|---|---|---|---|
| IL_95908.2 Compare | IL_4NVV_102, IL_4IOA_099 | IL_3U5F_086 | |
| IL_84950.1 Compare | IL_3U5F_086 | IL_4NVV_102, IL_4IOA_099 | IL_387D_001, IL_4CUX_087, IL_1XOK_001, IL_1U9S_008, IL_1KXK_003, IL_4NVV_072, IL_4IOA_067, IL_1XOK_002 |
- Annotations
-
- (2)
- Multiple bulged bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.29 | Max 0.62
Coloring options: