Motif IL_31663.1 Version IL_31663.1 of this group appears in releases 1.5 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4IOA_061 | 4IOA | 0.3867 | 1 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | * | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | cWW |
2 | IL_1S72_072 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 2090 | G | 2091 | G | 2092 | G | 2093 | * | U | 2652 | A | 2653 | C | 2654 | cWW | cWW | cSH | cWW |
3 | IL_3U5H_096 | 3U5H | 0.3681 | 0 | 5 | 25S rRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | cWW | cSH | cWW |
4 | IL_4A1B_089 | 4A1B | 0.4416 | 1 | 1 | 26S RRNA | G | 2201 | A | 2202 | A | 2203 | G | 2205 | * | C | 2230 | G | 2231 | C | 2232 | cWW | ncWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUCA*UAC | 1 |
GGGG*UAC | 1 |
GCGG*UAC | 1 |
GAAUG*CGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUC*A | 1 |
GG*A | 1 |
CG*A | 1 |
AAU*G | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_31663.1 | Only in the parent motif |
---|---|---|---|
IL_92267.1 Compare | IL_3U5H_096, IL_1S72_072 | IL_4A1B_089, IL_4IOA_061 | IL_3E5C_001 |
IL_90133.2 Compare | IL_4A1B_089, IL_4IOA_061 | IL_3U5H_096, IL_1S72_072 | IL_3U5F_028, IL_2AW7_006, IL_3V2F_031, IL_1S72_053 |
Children motifs
Child motif | Common motif instances | Only in IL_31663.1 | Only in the child motif |
---|---|---|---|
IL_77277.1 Compare | IL_3U5H_096, IL_4A1B_089, IL_4IOA_061 | IL_1S72_072 | IL_1X8W_009, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_4NVV_089, IL_3Q1Q_006, IL_1VW3_032, IL_1J2B_003, IL_1VW3_029, IL_3U5H_071, IL_4A1B_093 |
IL_38207.1 Compare | IL_1S72_072 | IL_3U5H_096, IL_4A1B_089, IL_4IOA_061 | IL_3E5C_001 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-L-cWW
- Heat map statistics
- Min 0.37 | Avg 0.33 | Max 0.51
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