#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 71-72-63-44-5
1 IL_4IOA_0614IOA0.38671X LSU rRNAG1503G1504U1505A1507*U1515A1516C1517cWWcWWncWHcWW
2 IL_1S72_0721S720.000000 LSU rRNAG2090G2091G2092G2093*U2652A2653C2654cWWcWWcSHcWW
3 IL_3U5H_0963U5H0.36810525S rRNAG2391C2392G2393G2394*U2986A2987C2988cWWcWWcSHcWW
4 IL_4A1B_0894A1B0.44161126S RRNAG2201A2202A2203G2205*C2230G2231C2232cWWncWWncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUCA*UAC1
GGGG*UAC1
GCGG*UAC1
GAAUG*CGC1
Non-Watson-Crick part of the motif
SequenceCounts
GUC*A1
GG*A1
CG*A1
AAU*G1

Release history

Release1.51.61.71.81.91.101.111.121.131.14
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_31663.1Only in the child motif
IL_77277.1
Compare
IL_3U5H_096, IL_4A1B_089, IL_4IOA_061IL_1S72_072IL_1X8W_009, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_4NVV_089, IL_3Q1Q_006, IL_1VW3_032, IL_1J2B_003, IL_1VW3_029, IL_3U5H_071, IL_4A1B_093
IL_38207.1
Compare
IL_1S72_072IL_3U5H_096, IL_4A1B_089, IL_4IOA_061IL_3E5C_001
Annotations
  • (4)
  • Basepair signature
    cWW-cWW-L-cWW
    Heat map statistics
    Min 0.37 | Avg 0.33 | Max 0.51
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