Motif IL_92484.1 Version IL_92484.1 of this group appears in releases 0.6 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-3 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_009 | 1S72 | 0.4365 | 1 | 0 | LSU rRNA | A | 248 | G | 249 | * | C | 260 | A | 261 | A | 262 | G | 264 | U | 265 | cWW | cWW | |
| 2 | IL_3U5H_007 | 3U5H | 0.1602 | 1 | 5 | 25S rRNA | A | 123 | U | 124 | * | A | 144 | G | 145 | U | 146 | G | 148 | U | 149 | cWW | cWW | |
| 3 | IL_4A1B_004 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | A | 121 | U | 122 | * | A | 144 | A | 145 | U | 146 | G | 148 | U | 149 | cWW | cWW | |
| 4 | IL_2XZM_062 | 2XZM | 0.4164 | 1 | A | 18S RRNA | U | 1229 | U | 1230 | * | A | 1197 | A | 1198 | G | 1199 | G | 1201 | A | 1202 | cWW | cWW | |
| 5 | IL_2XZM_018 | 2XZM | 0.7818 | 1 | A | 18S RRNA | U | 336 | G | 337 | * | U | 309 | C | 310 | U | 311 | C | 312 | A | 314 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*CAAUGU | 1 |
| AU*AGUUGU | 1 |
| AU*AAUUGU | 1 |
| AAGGGA*UU | 1 |
| UCUCGA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AAUG | 1 |
| *GUUG | 1 |
| *AUUG | 1 |
| AGGG* | 1 |
| CUCG* | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92484.1 | Only in the parent motif |
|---|---|---|---|
| IL_56096.1 Compare | IL_2XZM_018 | IL_4A1B_004, IL_3U5H_007, IL_1S72_009, IL_2XZM_062 | |
| IL_66718.1 Compare | IL_1S72_009 | IL_4A1B_004, IL_3U5H_007, IL_2XZM_018, IL_2XZM_062 | IL_3NPB_005 |
| IL_60708.1 Compare | IL_2XZM_062 | IL_4A1B_004, IL_3U5H_007, IL_1S72_009, IL_2XZM_018 | IL_2AW7_015, IL_3O30_088 |
Children motifs
| Child motif | Common motif instances | Only in IL_92484.1 | Only in the child motif |
|---|---|---|---|
| IL_39980.1 Compare | IL_4A1B_004, IL_3U5H_007, IL_1S72_009 | IL_2XZM_018, IL_2XZM_062 | IL_4BPP_061 |
- Annotations
- Basepair signature
- cWW-cSH-R-R-cWW
- Heat map statistics
- Min 0.16 | Avg 0.47 | Max 0.85
Coloring options: