#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 121-122-113-104-95-86-7
1 IL_4IOA_0174IOA0.42560Triple sheared with non-canonical cWW (H)X LSU rRNAU716G717A718A719A720C721*G736C737G738G739A740G741cWWntSHtHStHSncWScWW
2 IL_1VW3_0031VW30.42211A21S ribosomal RNAU407G408A410A411A412U413*A58U59G60G61A62G63cWWtSHtHStHSntHScWW
3 IL_4GMA_0044GMA0.00000ZAdenosylcobalamin riboswitchC97G98A99A100G101C102*G138U139G140G141A142G143cWWntSHntHSntHSncWW
4 IL_1VW3_0771VW30.50190A21S ribosomal RNAU2746G2747U2748A2749A2750G2751*C2731G2732A2733A2734A2735G2736ncWWtSHcWWcWW
5 IL_4A1B_0334A1B0.55310126S RRNAC794G795A796A797G798G799*C781U782U783G784A785G786cWWtSHtHScWW
6 IL_1FJG_0261FJG0.87172A SSU rRNAU605G606A609G610A611C612*G628G629G630G631A632G633cWWtSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAAAC*GCGGAG1
UGAAAAU*AUGGAG1
CGAAGC*GUGGAG1
UGUAAG*CGAAAG1
CGAAGG*CUUGAG1
UGAAAGAC*GGGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA*CGGA1
GAAAA*UGGA1
GAAG*UGGA1
GUAA*GAAA1
GAAG*UUGA1
GAAAGA*GGGA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_93568.3Only in the parent motif
IL_93568.2
Compare
IL_1FJG_026, IL_4A1B_033, IL_4GMA_004, IL_4IOA_017IL_1VW3_003, IL_1VW3_077

Children motifs

Child motifCommon motif instancesOnly in IL_93568.3Only in the child motif
IL_93568.4
Compare
IL_1FJG_026, IL_4A1B_033, IL_4GMA_004, IL_4IOA_017, IL_1VW3_003, IL_1VW3_077IL_4N0T_001
Annotations
  • (5)
  • Triple sheared with non-canonical cWW (H) (1)
  • Basepair signature
    cWW-tSH-tHS-tHS-L-R-cWW
    Heat map statistics
    Min 0.29 | Avg 0.56 | Max 0.97
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