Motif IL_93568.3 Version IL_93568.3 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4IOA_017 | 4IOA | 0.4256 | 0 | Triple sheared with non-canonical cWW (H) | X | LSU rRNA | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | * | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | cWW | ntSH | tHS | tHS | ncWS | cWW |
2 | IL_1VW3_003 | 1VW3 | 0.4221 | 1 | A | 21S ribosomal RNA | U | 407 | G | 408 | A | 410 | A | 411 | A | 412 | U | 413 | * | A | 58 | U | 59 | G | 60 | G | 61 | A | 62 | G | 63 | cWW | tSH | tHS | tHS | ntHS | cWW | |
3 | IL_4GMA_004 | 4GMA | 0.0000 | 0 | Z | Adenosylcobalamin riboswitch | C | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | * | G | 138 | U | 139 | G | 140 | G | 141 | A | 142 | G | 143 | cWW | ntSH | ntHS | ntHS | ncWW | ||
4 | IL_1VW3_077 | 1VW3 | 0.5019 | 0 | A | 21S ribosomal RNA | U | 2746 | G | 2747 | U | 2748 | A | 2749 | A | 2750 | G | 2751 | * | C | 2731 | G | 2732 | A | 2733 | A | 2734 | A | 2735 | G | 2736 | ncWW | tSH | cWW | cWW | |||
5 | IL_4A1B_033 | 4A1B | 0.5531 | 0 | 1 | 26S RRNA | C | 794 | G | 795 | A | 796 | A | 797 | G | 798 | G | 799 | * | C | 781 | U | 782 | U | 783 | G | 784 | A | 785 | G | 786 | cWW | tSH | tHS | cWW | |||
6 | IL_1FJG_026 | 1FJG | 0.8717 | 2 | A | SSU rRNA | U | 605 | G | 606 | A | 609 | G | 610 | A | 611 | C | 612 | * | G | 628 | G | 629 | G | 630 | G | 631 | A | 632 | G | 633 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAAAC*GCGGAG | 1 |
UGAAAAU*AUGGAG | 1 |
CGAAGC*GUGGAG | 1 |
UGUAAG*CGAAAG | 1 |
CGAAGG*CUUGAG | 1 |
UGAAAGAC*GGGGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAAA*CGGA | 1 |
GAAAA*UGGA | 1 |
GAAG*UGGA | 1 |
GUAA*GAAA | 1 |
GAAG*UUGA | 1 |
GAAAGA*GGGA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | Updated, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_93568.3 | Only in the parent motif |
---|---|---|---|
IL_93568.2 Compare | IL_1FJG_026, IL_4A1B_033, IL_4GMA_004, IL_4IOA_017 | IL_1VW3_003, IL_1VW3_077 |
Children motifs
Child motif | Common motif instances | Only in IL_93568.3 | Only in the child motif |
---|---|---|---|
IL_93568.4 Compare | IL_1FJG_026, IL_4A1B_033, IL_4GMA_004, IL_4IOA_017, IL_1VW3_003, IL_1VW3_077 | IL_4N0T_001 |
- Annotations
-
- (5)
- Triple sheared with non-canonical cWW (H) (1)
- Basepair signature
- cWW-tSH-tHS-tHS-L-R-cWW
- Heat map statistics
- Min 0.29 | Avg 0.56 | Max 0.97
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