Motif IL_93568.4 Version IL_93568.4 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_026 | 1FJG | 0.8717 | 2 | A | U | 605 | G | 606 | A | 609 | G | 610 | A | 611 | C | 612 | * | G | 628 | G | 629 | G | 630 | G | 631 | A | 632 | G | 633 | cWW | tSH | cWW | ||||
| 2 | IL_4N0T_001 | 4N0T | 0.5357 | 0 | Double sheared; A in syn; two near cWW pairs | B | A | 95 | G | 96 | A | 97 | G | 98 | A | 99 | C | 100 | * | G | 31 | U | 32 | C | 33 | A | 34 | A | 35 | U | 36 | cWW | ncWW | cWW | |||
| 3 | IL_4A1B_033 | 4A1B | 0.5531 | 0 | 1 | C | 794 | G | 795 | A | 796 | A | 797 | G | 798 | G | 799 | * | C | 781 | U | 782 | U | 783 | G | 784 | A | 785 | G | 786 | cWW | tSH | tHS | cWW | |||
| 4 | IL_1VW3_077 | 1VW3 | 0.5019 | 0 | A | U | 2746 | G | 2747 | U | 2748 | A | 2749 | A | 2750 | G | 2751 | * | C | 2731 | G | 2732 | A | 2733 | A | 2734 | A | 2735 | G | 2736 | ncWW | tSH | cWW | cWW | |||
| 5 | IL_4GMA_004 | 4GMA | 0.0000 | 0 | Z | C | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | * | G | 138 | U | 139 | G | 140 | G | 141 | A | 142 | G | 143 | cWW | ntSH | ntHS | ntHS | ncWW | ||
| 6 | IL_1VW3_003 | 1VW3 | 0.4221 | 1 | A | U | 407 | G | 408 | A | 410 | A | 411 | A | 412 | U | 413 | * | A | 58 | U | 59 | G | 60 | G | 61 | A | 62 | G | 63 | cWW | tSH | tHS | tHS | ntHS | cWW | |
| 7 | IL_4IOA_017 | 4IOA | 0.4256 | 0 | Triple sheared with non-canonical cWW (H) | X | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | * | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | cWW | ntSH | tHS | tHS | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGAC*GGGGAG | 1 |
| AGAGAC*GUCAAU | 1 |
| CGAAGG*CUUGAG | 1 |
| UGUAAG*CGAAAG | 1 |
| CGAAGC*GUGGAG | 1 |
| UGAAAAU*AUGGAG | 1 |
| UGAAAC*GCGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAGA*GGGA | 1 |
| GAGA*UCAA | 1 |
| GAAG*UUGA | 1 |
| GUAA*GAAA | 1 |
| GAAG*UGGA | 1 |
| GAAAA*UGGA | 1 |
| GAAA*CGGA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_93568.4 | Only in the parent motif |
|---|---|---|---|
| IL_93568.3 Compare | IL_1FJG_026, IL_4A1B_033, IL_4GMA_004, IL_4IOA_017, IL_1VW3_003, IL_1VW3_077 | IL_4N0T_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_93568.4 | Only in the child motif |
|---|---|---|---|
| IL_93568.5 Compare | IL_1FJG_026, IL_4A1B_033, IL_4GMA_004, IL_4IOA_017, IL_4N0T_001, IL_1VW3_003, IL_1VW3_077 | IL_1VX2_014, IL_1VX2_076 |
- Annotations
-
- (5)
- Triple sheared with non-canonical cWW (H) (1)
- Double sheared; A in syn; two near cWW pairs (1)
- Basepair signature
- cWW-tSH-tHS-tHS-L-R-cWW
- Heat map statistics
- Min 0.29 | Avg 0.58 | Max 0.97
Coloring options: