Motif IL_93630.1 Version IL_93630.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-3 | 1-9 | 2-4 | 2-8 | 3-7 | 4-9 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_062 | 5TBW | 0.9325 | 1 | 1 | LSU rRNA | G | 1500 | U | 1501 | C | 1502 | A | 1503 | A | 1504 | C | 1505 | * | G | 1513 | A | 1515 | C | 1516 | cWW | tWH | cWS | cWW | |||||
| 2 | IL_4V88_408 | 4V88 | 0.0000 | 1 | C-loop with extra cWW pair | A6 | SSU rRNA | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | C | 448 | * | G | 458 | A | 460 | G | 461 | cSH | cWW | tWH | cWS | cWW | cWW | ||
| 3 | IL_7A0S_105 | 7A0S | 0.5721 | 3 | Y | 5S rRNA | C | 35 | A | 36 | C | 37 | C | 38 | C | 39 | C | 40 | * | G | 46 | U | 50 | G | 51 | cWW | ncSH | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAAC*GGAC | 1 |
| CCAAUC*GGAG | 1 |
| CACCCC*GAACUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAA*GA | 1 |
| CAAU*GA | 1 |
| ACCC*AACU | 1 |
- Annotations
-
- (2)
- C-loop with extra cWW pair (1)
- Basepair signature
- cWW-L-R-L-L-L-cWW
- Heat map statistics
- Min 0.57 | Avg 0.54 | Max 0.94
Coloring options: