Motif IL_93699.1 Version IL_93699.1 of this group appears in releases 3.77 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 1-6 | 1-13 | 2-12 | 5-12 | 6-11 | 6-13 | 7-10 | 8-9 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5J7L_248 | 5J7L | 0.0000 | 1 | Kink-turn (H) | DA | LSU rRNA | C | 97 | G | 98 | U | 99 | U | 100 | A | 101 | A | 103 | A | 104 | C | 105 | * | G | 81 | U | 82 | A | 83 | A | 84 | G | 85 | ncsS | cWW | tsS | tHH | tHS | tSs | ncWS | cWW |
2 | IL_7A0S_050 | 7A0S | 0.8071 | 0 | Kink-turn | X | LSU rRNA | C | 1598 | G | 1599 | U | 1600 | U | 1601 | G | 1602 | A | 1603 | A | 1604 | A | 1605 | * | U | 1426 | G | 1427 | G | 1428 | A | 1429 | G | 1430 | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGUUAUAAC*GUAAG | 1 |
CGUUGAAA*UGGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUUAUAA*UAA | 1 |
GUUGAA*GGA | 1 |
Release history
Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (H) (1)
- Kink-turn (1)
- Basepair signature
- cWW-L-R-L-R-L-tHS-L-cWW-L
- Heat map statistics
- Min 0.81 | Avg 0.40 | Max 0.81
Coloring options: