Motif IL_93820.1 Version IL_93820.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_114 | 8C3A | 0.3122 | 0 | Triple sheared (H) | 1 | LSU rRNA | U | 2807 | C | 2808 | A | 2809 | A | 2810 | G | 2811 | * | C | 2821 | G | 2822 | A | 2823 | C | 2824 | A | 2825 | cWW | tSH | tHS | cWW | |
2 | IL_5TBW_106 | 5TBW | 0.1105 | 0 | Triple sheared | 1 | LSU rRNA | U | 2835 | C | 2836 | A | 2837 | A | 2838 | G | 2839 | * | C | 2849 | G | 2850 | A | 2851 | C | 2852 | A | 2853 | cWW | ntSH | tHS | cWW | |
3 | IL_5J7L_338 | 5J7L | 0.0000 | 0 | Triple sheared | DA | LSU rRNA | C | 2466 | C | 2467 | A | 2468 | A | 2469 | G | 2470 | * | C | 2480 | G | 2481 | A | 2482 | C | 2483 | G | 2484 | cWW | cWB | ntSH | tHS | cWW |
4 | IL_4WF9_093 | 4WF9 | 0.1248 | 0 | Triple sheared | X | LSU rRNA | C | 2493 | C | 2494 | A | 2495 | A | 2496 | G | 2497 | * | C | 2507 | G | 2508 | A | 2509 | C | 2510 | G | 2511 | cWW | cWB | tSH | ntHS | cWW |
5 | IL_7A0S_087 | 7A0S | 0.1399 | 0 | Triple sheared | X | LSU rRNA | C | 2445 | C | 2446 | G | 2447 | A | 2448 | G | 2449 | * | C | 2459 | G | 2460 | G | 2461 | C | 2462 | G | 2463 | cWW | ncWB | tHS | cWW | |
6 | IL_8VTW_094 | 8VTW | 0.2066 | 0 | Triple sheared (H) | 1A | LSU rRNA | C | 2466 | C | 2467 | G | 2468 | A | 2469 | G | 2470 | * | C | 2480 | G | 2481 | G | 2482 | C | 2483 | G | 2484 | cWW | cWB | tHS | cWW | |
7 | IL_4V9F_085 | 4V9F | 0.2352 | 0 | Triple sheared | 0 | LSU rRNA | G | 2501 | C | 2502 | A | 2503 | A | 2504 | G | 2505 | * | C | 2515 | G | 2516 | A | 2517 | C | 2518 | C | 2519 | cWW | cWB | ntSH | tHS | cWW |
8 | IL_1U6B_002 | 1U6B | 0.2943 | 0 | Triple sheared | B | 197-MER | G | 84 | C | 85 | A | 86 | A | 87 | C | 88 | * | G | 56 | A | 57 | A | 58 | A | 59 | C | 60 | cWW | ncWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCAAG*CGACA | 2 |
CCAAG*CGACG | 2 |
CCGAG*CGGCG | 2 |
GCAAG*CGACC | 1 |
GCAAC*GAAAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CAA*GAC | 5 |
CGA*GGC | 2 |
CAA*AAA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple sheared (6)
- Triple sheared (H) (2)
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.23 | Max 0.41
Coloring options: