Motif IL_94403.3 Version IL_94403.3 of this group appears in releases 1.6 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 4-8 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4JRC_004 | 4JRC | 0.6030 | 1 | B | C | 37 | G | 39 | A | 40 | A | 41 | G | 42 | C | 43 | G | 44 | A | 45 | G | 46 | * | U | 68 | G | 69 | cWW | tWH | cWW |
| 2 | IL_3UMY_002 | 3UMY | 0.5653 | 2 | B | G | 2110 | G | 2112 | U | 2113 | A | 2114 | G | 2115 | G | 2116 | A | 2117 | A | 2119 | G | 2120 | * | C | 2178 | C | 2179 | cWW | tWH | cWW |
| 3 | IL_3V2F_082 | 3V2F | 0.0000 | 2 | A | G | 2110 | G | 2112 | U | 2113 | A | 2114 | G | 2115 | G | 2116 | A | 2117 | A | 2119 | G | 2120 | * | C | 2178 | C | 2179 | cWW | cWW | |
| 4 | IL_1MZP_002 | 1MZP | 0.2973 | 2 | B | G | 6 | G | 8 | U | 9 | A | 10 | G | 11 | G | 12 | A | 13 | A | 15 | G | 16 | * | C | 49 | C | 50 | cWW | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGUAGGAUAG*CC | 3 |
| CCGAAGCGAG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUAGGAUA* | 3 |
| CGAAGCGA* | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_94403.3 | Only in the parent motif |
|---|---|---|---|
| IL_94403.2 Compare | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 | IL_3V2F_082 | |
| IL_71565.4 Compare | IL_3V2F_082 | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 | IL_1KXK_003, IL_1S72_093, IL_3U5F_086 |
Children motifs
| Child motif | Common motif instances | Only in IL_94403.3 | Only in the child motif |
|---|---|---|---|
| IL_94403.4 Compare | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 | IL_3V2F_082 | |
| IL_39674.1 Compare | IL_3V2F_082 | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 | IL_1KXK_003, IL_1S72_093, IL_3U5F_086 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-L-tWH-L-L-L-cWW
- Heat map statistics
- Min 0.30 | Avg 0.39 | Max 0.63
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