Motif IL_71565.4 Version IL_71565.4 of this group appears in releases 1.5 to 1.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V2F_082 | 3V2F | 0.4027 | 9 | A | C | 2178 | C | 2179 | * | G | 2110 | G | 2120 | cWW | cWW | |
| 2 | IL_1S72_093 | 1S72 | 0.0000 | 3 | Bulged stacked bases (H) | 0 | U | 2732 | U | 2733 | * | A | 2746 | G | 2750 | cWW | cWW |
| 3 | IL_1KXK_003 | 1KXK | 0.3098 | 2 | Multiple bulged bases | A | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW |
| 4 | IL_3U5F_086 | 3U5F | 0.3335 | 1 | 6 | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GCGUAGGAUAG | 1 |
| UU*ACGUG | 1 |
| UG*CACG | 1 |
| UA*UUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CGUAGGAUA | 1 |
| *CGU | 1 |
| *AC | 1 |
| *U | 1 |
Release history
| Release | 1.5 |
|---|---|
| Date | 2013-08-03 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_71565.4 | Only in the parent motif |
|---|---|---|---|
| IL_71565.3 Compare | IL_1KXK_003, IL_1S72_093, IL_3U5F_086 | IL_3V2F_082 | |
| IL_94403.1 Compare | IL_3V2F_082 | IL_1KXK_003, IL_1S72_093, IL_3U5F_086 | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_71565.4 | Only in the child motif |
|---|---|---|---|
| IL_33484.1 Compare | IL_1KXK_003, IL_3U5F_086 | IL_3V2F_082, IL_1S72_093 | IL_1FJG_022 |
| IL_94403.3 Compare | IL_3V2F_082 | IL_1KXK_003, IL_1S72_093, IL_3U5F_086 | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 |
| IL_10365.1 Compare | IL_1S72_093 | IL_1KXK_003, IL_3V2F_082, IL_3U5F_086 |
- Annotations
-
- (2)
- Multiple bulged bases (1)
- Bulged stacked bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.17 | Avg 0.31 | Max 0.64
Coloring options: