Motif IL_94518.2 Version IL_94518.2 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 4-10 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4N0T_001 | 4N0T | 0.6922 | 0 | Double sheared; A in syn; two near cWW pairs | B | U6 snRNA | G | 31 | U | 32 | C | 33 | A | 34 | A | 35 | U | 36 | * | A | 95 | G | 96 | A | 97 | G | 98 | A | 99 | C | 100 | cWW | ncWW | cWW | ||||
| 2 | IL_4EYA_005 | 4EYA | 0.4728 | 0 | Tandem non-canonical cWW pairs with near WC pairs | g+h | RNA (12-mer) | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | * | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | ncSW | ncWW | ncWw | ncWW | cWW | ||
| 3 | IL_4LFB_030 | 4LFB | 0.0000 | 0 | A | SSU rRNA | G | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | C | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | ||
| 4 | IL_5J7L_034 | 5J7L | 0.0647 | 0 | AA | SSU rRNA | A | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | U | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | ||
| 5 | IL_1D4R_002 | 1D4R | 0.4315 | 0 | Other IL | A+B | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | * | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | cWW | cBW | cWB | cWW | |||
| 6 | IL_4WF9_058 | 4WF9 | 0.7415 | 1 | X | LSU rRNA | C | 1511 | U | 1512 | A | 1513 | A | 1514 | G | 1515 | C | 1516 | * | G | 1564 | U | 1565 | G | 1566 | A | 1567 | U | 1568 | G | 1570 | cWW | ntHS | ncWS | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAAU*AGAGAC | 1 |
| CCUUGG*CCUUGG | 1 |
| GGAAUU*AGGAAC | 1 |
| AGAAUU*AGGAAU | 1 |
| GGGAGC*GGGAGC | 1 |
| CUAAGC*GUGAUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAU*GGAA | 2 |
| UCAA*GAGA | 1 |
| CUUG*CUUG | 1 |
| GGAG*GGAG | 1 |
| UAAG*UGAUG | 1 |
- Annotations
-
- (3)
- Other IL (1)
- Tandem non-canonical cWW pairs with near WC pairs (1)
- Double sheared; A in syn; two near cWW pairs (1)
- Basepair signature
- cWW-cWW-L-R-cWW-L-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.54 | Max 1.09
Coloring options: