#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 121-122-113-104-94-105-86-7
1 IL_4N0T_0014N0T0.69220Double sheared; A in syn; two near cWW pairsBU6 snRNAG31U32C33A34A35U36*A95G96A97G98A99C100cWWncWWcWW
2 IL_4EYA_0054EYA0.47280Tandem non-canonical cWW pairs with near WC pairsg+hRNA (12-mer)C5C6U7U8G9G10*C5C6U7U8G9G10ncSWncWWncWwncWWcWW
3 IL_4LFB_0304LFB0.00000A SSU rRNAG673G674A675A676U677U678*A712G713G714A715A716C717cWWcWWncWwcWWncWWacWW
4 IL_5J7L_0345J7L0.06470AA SSU rRNAA673G674A675A676U677U678*A712G713G714A715A716U717cWWcWWncWwcWWncWWacWW
5 IL_1D4R_0021D4R0.43150Other ILA+B29-MER OF MODIFIED SRP RNA HELIX 6G12G13G14A15G16C17*G12G13G14A15G16C17cWWcBWcWBcWW
6 IL_4WF9_0584WF90.74151X LSU rRNAC1511U1512A1513A1514G1515C1516*G1564U1565G1566A1567U1568G1570cWWntHSncWSncWWacWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUCAAU*AGAGAC1
CCUUGG*CCUUGG1
GGAAUU*AGGAAC1
AGAAUU*AGGAAU1
GGGAGC*GGGAGC1
CUAAGC*GUGAUGG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAU*GGAA2
UCAA*GAGA1
CUUG*CUUG1
GGAG*GGAG1
UAAG*UGAUG1

Release history

Release3.123.133.143.153.163.17
Date2018-11-162018-12-142019-01-112019-02-082019-03-082019-04-05
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Other IL (1)
  • Tandem non-canonical cWW pairs with near WC pairs (1)
  • Double sheared; A in syn; two near cWW pairs (1)
  • Basepair signature
    cWW-cWW-L-R-cWW-L-R-cWW
    Heat map statistics
    Min 0.06 | Avg 0.54 | Max 1.09
    Help

    Coloring options:

    IL_4N0T_001:IL_4N0T_001 = 0IL_4N0T_001:IL_4EYA_005 = 0.7417IL_4N0T_001:IL_4LFB_030 = 0.6922IL_4N0T_001:IL_5J7L_034 = 0.699IL_4N0T_001:IL_1D4R_002 = 0.8575IL_4N0T_001:IL_4WF9_058 = 1.0942IL_4EYA_005:IL_4N0T_001 = 0.7417IL_4EYA_005:IL_4EYA_005 = 0IL_4EYA_005:IL_4LFB_030 = 0.4728IL_4EYA_005:IL_5J7L_034 = 0.4936IL_4EYA_005:IL_1D4R_002 = 0.6443IL_4EYA_005:IL_4WF9_058 = 0.7803IL_4LFB_030:IL_4N0T_001 = 0.6922IL_4LFB_030:IL_4EYA_005 = 0.4728IL_4LFB_030:IL_4LFB_030 = 0IL_4LFB_030:IL_5J7L_034 = 0.0647IL_4LFB_030:IL_1D4R_002 = 0.4315IL_4LFB_030:IL_4WF9_058 = 0.7415IL_5J7L_034:IL_4N0T_001 = 0.699IL_5J7L_034:IL_4EYA_005 = 0.4936IL_5J7L_034:IL_4LFB_030 = 0.0647IL_5J7L_034:IL_5J7L_034 = 0IL_5J7L_034:IL_1D4R_002 = 0.4358IL_5J7L_034:IL_4WF9_058 = 0.738IL_1D4R_002:IL_4N0T_001 = 0.8575IL_1D4R_002:IL_4EYA_005 = 0.6443IL_1D4R_002:IL_4LFB_030 = 0.4315IL_1D4R_002:IL_5J7L_034 = 0.4358IL_1D4R_002:IL_1D4R_002 = 0IL_1D4R_002:IL_4WF9_058 = 0.8208IL_4WF9_058:IL_4N0T_001 = 1.0942IL_4WF9_058:IL_4EYA_005 = 0.7803IL_4WF9_058:IL_4LFB_030 = 0.7415IL_4WF9_058:IL_5J7L_034 = 0.738IL_4WF9_058:IL_1D4R_002 = 0.8208IL_4WF9_058:IL_4WF9_058 = 0IL_4N0T_001IL_4EYA_005IL_4LFB_030IL_5J7L_034IL_1D4R_002IL_4WF9_058Discrepancy0.000.200.400.600.801.00
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