Motif IL_95150.3 Version IL_95150.3 of this group appears in releases 0.9 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3OWZ_006 | 3OWZ | 0.0615 | 1 | B | Domain II of glycine riboswitch | C | 31 | G | 32 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW | |
| 2 | IL_3OWZ_002 | 3OWZ | 0.0000 | 1 | A | Domain II of glycine riboswitch | C | 31 | G | 32 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW | |
| 3 | IL_1FJG_003 | 1FJG | 0.9875 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAG*CAG | 2 |
| CCUAAG*UAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*A | 2 |
| CUAA*A | 1 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_95150.3 | Only in the parent motif |
|---|---|---|---|
| IL_95150.2 Compare | IL_3OWZ_006, IL_3OWZ_002 | IL_1FJG_003 | IL_1FJG_063 |
| IL_64184.2 Compare | IL_1FJG_003 | IL_3OWZ_006, IL_3OWZ_002 | IL_3U5F_004, IL_2AW7_003, IL_1S72_053 |
Children motifs
| Child motif | Common motif instances | Only in IL_95150.3 | Only in the child motif |
|---|---|---|---|
| IL_95150.4 Compare | IL_3OWZ_006, IL_3OWZ_002 | IL_1FJG_003 | IL_1FJG_063 |
| IL_06211.1 Compare | IL_1FJG_003 | IL_3OWZ_006, IL_3OWZ_002 | IL_2AW7_003, IL_4BPP_004 |
- Annotations
- Basepair signature
- cWW-cHW-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.45 | Max 0.99
Coloring options: