Motif IL_06211.1 Version IL_06211.1 of this group appears in releases 1.5 to 1.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_003 | 1FJG | 0.3088 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | |
| 2 | IL_2AW7_003 | 2AW7 | 0.0000 | 2 | A | 16S ribosomal RNA | C | 47 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | tSs | cWW |
| 3 | IL_4BPP_004 | 4BPP | 0.3314 | 3 | A | 18S RRNA | U | 41 | U | 44 | A | 45 | C | 47 | * | G | 423 | A | 424 | A | 425 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUAAG*UAG | 1 |
| CCUAAC*GGG | 1 |
| UAUUAAC*GAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*A | 1 |
| CUAA*G | 1 |
| AUUAA*A | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 |
|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_06211.1 | Only in the parent motif |
|---|---|---|---|
| IL_95150.3 Compare | IL_1FJG_003 | IL_2AW7_003, IL_4BPP_004 | IL_3OWZ_006, IL_3OWZ_002 |
| IL_91273.1 Compare | IL_2AW7_003 | IL_4BPP_004, IL_1FJG_003 | IL_3U5F_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_06211.1 | Only in the child motif |
|---|---|---|---|
| IL_06211.2 Compare | IL_2AW7_003, IL_1FJG_003 | IL_4BPP_004 | IL_3U5F_004 |
| IL_22358.1 Compare | IL_4BPP_004 | IL_2AW7_003, IL_1FJG_003 | IL_1MFQ_006 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.31 | Avg 0.24 | Max 0.46
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