Motif IL_95485.1 Version IL_95485.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MMS_002 | 1MMS | 0.2436 | 1 | Major groove platform with extra cWW | C | 23S RIBOSOMAL RNA | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW | |
| 2 | IL_5D8H_003 | 5D8H | 0.2244 | 1 | Major groove platform with extra cWW | A | LSU rRNA | G | 1197 | G | 1199 | U | 1200 | G | 1201 | * | C | 1210 | U | 1211 | C | 1212 | cWW | cSH | cWw | cWW | |
| 3 | IL_4V9F_028 | 4V9F | 0.1345 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | G | 830 | U | 831 | U | 832 | G | 833 | * | C | 849 | U | 850 | C | 851 | cWW | cSH | cWw | cWW | |
| 4 | IL_4Y4O_199 | 4Y4O | 0.0000 | 0 | Major groove platform with extra cWW (H) | 2A | LSU rRNA | G | 738 | G | 739 | U | 740 | G | 741 | * | C | 756 | U | 757 | C | 758 | cWW | cSH | cWw | cWW | |
| 5 | IL_4IOA_018 | 4IOA | 0.0720 | 0 | X | LSU rRNA | G | 751 | G | 752 | U | 753 | G | 754 | * | C | 769 | U | 770 | C | 771 | cWW | cSH | ntSH | cWw | cWW | |
| 6 | IL_4V8P_195 | 4V8P | 0.1566 | 0 | Major groove platform with extra cWW (H) | D1 | LSU rRNA | G | 894 | A | 895 | U | 896 | A | 897 | * | U | 913 | U | 914 | C | 915 | cWW | cSH | cWw | cWW | |
| 7 | IL_4V88_397 | 4V88 | 0.2054 | 1 | Major groove platform with extra cWW | A6 | SSU rRNA | U | 259 | U | 261 | U | 262 | C | 263 | * | G | 204 | U | 205 | A | 206 | cWW | cSH | cWw | cWW | |
| 8 | IL_4V5O_096 | 4V5O | 0.2170 | 1 | Major groove platform with extra cWW (H) | BA | SSU rRNA | U | 256 | G | 257 | U | 259 | C | 260 | * | G | 199 | U | 200 | A | 201 | cWW | ncSH | cWw | cWW | |
| 9 | IL_4Y4O_269 | 4Y4O | 0.2738 | 1 | Major groove minor groove platform with extra cWW (H) | 2A | LSU rRNA | G | 2489 | G | 2490 | U | 2492 | U | 2493 | * | A | 2459 | U | 2460 | C | 2461 | cWW | ncSH | ncWB | cWw | cWW |
| 10 | IL_4V8P_267 | 4V8P | 0.3915 | 1 | D1 | LSU rRNA | U | 2846 | U | 2847 | U | 2849 | U | 2850 | * | G | 2816 | U | 2817 | G | 2818 | cWW | cWw | cWW | |||
| 11 | IL_4V9F_003 | 4V9F | 0.4542 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | C | 440 | A | 441 | A | 442 | C | 443 | * | G | 39 | C | 40 | G | 41 | cWW | cSH | cWWa | ncWW | cWW |
| 12 | IL_3PDR_004 | 3PDR | 0.5098 | 0 | Major groove platform with extra cWW | X | M-box riboswitch (ykoK leader) | C | 33 | U | 34 | C | 35 | C | 36 | * | G | 149 | U | 150 | G | 151 | cWW | cSH | cwW | cWW | |
| 13 | IL_3P49_006 | 3P49 | 0.7276 | 1 | A | Glycine riboswitch | C | 34 | G | 35 | A | 37 | G | 38 | * | C | 51 | A | 52 | G | 53 | ncWW | ntHS | ncWW | |||
| 14 | IL_3P49_009 | 3P49 | 0.7499 | 1 | A | Glycine riboswitch | C | 109 | G | 110 | A | 112 | G | 113 | * | C | 142 | A | 143 | G | 144 | ncWW | ntHS | cWW | |||
| 15 | IL_1XJR_001 | 1XJR | 0.7557 | 1 | Isolated basepair with bulged bases | A | s2m RNA | C | 9 | C | 10 | A | 12 | G | 13 | * | C | 39 | A | 40 | G | 41 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUG*CUC | 2 |
| GGUG*CUC | 2 |
| CGAAG*CAG | 2 |
| GUUG*CUC | 1 |
| GAUA*UUC | 1 |
| UUUUC*GUA | 1 |
| UGAUC*GUA | 1 |
| GGUUU*AUC | 1 |
| UUUUU*GUG | 1 |
| CAAC*GCG | 1 |
| CUCC*GUG | 1 |
| CCGAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGU*U | 2 |
| GU*U | 2 |
| UUU*U | 2 |
| GAA*A | 2 |
| UU*U | 1 |
| AU*U | 1 |
| GAU*U | 1 |
| GUU*U | 1 |
| AA*C | 1 |
| UC*U | 1 |
| CGA*A | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with extra cWW (6)
- (4)
- Major groove platform with extra cWW (H) (3)
- Isolated basepair with bulged bases (1)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cSH-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.45 | Max 0.87
Coloring options: